miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31313 5' -52.3 NC_006623.1 + 7751 0.66 0.9871
Target:  5'- cGCCGgu--CGCUGuAGauacauugucauaGUCAGAGUCCc -3'
miRNA:   3'- cCGGCaaguGCGAC-UC-------------CAGUCUUAGG- -5'
31313 5' -52.3 NC_006623.1 + 7936 0.66 0.985609
Target:  5'- aGGCucuCGUggaUCuuGCUgGGGGUCAGGuUCCu -3'
miRNA:   3'- -CCG---GCA---AGugCGA-CUCCAGUCUuAGG- -5'
31313 5' -52.3 NC_006623.1 + 130045 0.66 0.983802
Target:  5'- cGuuGUcCGCGuCUGAGG-CGGAcGUCCc -3'
miRNA:   3'- cCggCAaGUGC-GACUCCaGUCU-UAGG- -5'
31313 5' -52.3 NC_006623.1 + 123467 0.67 0.977345
Target:  5'- cGGCCGg-CGCGCUGcucuGGUUAu--UCCa -3'
miRNA:   3'- -CCGGCaaGUGCGACu---CCAGUcuuAGG- -5'
31313 5' -52.3 NC_006623.1 + 138145 0.67 0.977345
Target:  5'- cGGCCGg-CGCGCUGcucuGGUUAu--UCCa -3'
miRNA:   3'- -CCGGCaaGUGCGACu---CCAGUcuuAGG- -5'
31313 5' -52.3 NC_006623.1 + 107701 0.67 0.974558
Target:  5'- cGG-CGUUUuuuagcaGCGUUGGGGUCGGuAUCUc -3'
miRNA:   3'- -CCgGCAAG-------UGCGACUCCAGUCuUAGG- -5'
31313 5' -52.3 NC_006623.1 + 184 0.67 0.966026
Target:  5'- cGCCGUUCGgucgcggcCGCgaGGGGUUucGAAUCC -3'
miRNA:   3'- cCGGCAAGU--------GCGa-CUCCAGu-CUUAGG -5'
31313 5' -52.3 NC_006623.1 + 71528 0.7 0.883617
Target:  5'- -aCUGgaaAUGCUGGGGUCAG-AUCCg -3'
miRNA:   3'- ccGGCaagUGCGACUCCAGUCuUAGG- -5'
31313 5' -52.3 NC_006623.1 + 69577 0.71 0.877151
Target:  5'- uGGuCUGUgCGCGCUGcucugggaagugcuuGGUCAGAGUCUc -3'
miRNA:   3'- -CC-GGCAaGUGCGACu--------------CCAGUCUUAGG- -5'
31313 5' -52.3 NC_006623.1 + 130609 0.73 0.745342
Target:  5'- aGGCCGUaaACGC-GAGGacgcugcCGGAGUCCg -3'
miRNA:   3'- -CCGGCAagUGCGaCUCCa------GUCUUAGG- -5'
31313 5' -52.3 NC_006623.1 + 12340 1.14 0.00359
Target:  5'- uGGCCGUUCACGCUGAGGUCAGAAUCCc -3'
miRNA:   3'- -CCGGCAAGUGCGACUCCAGUCUUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.