miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31314 3' -54.8 NC_006623.1 + 15133 0.66 0.948663
Target:  5'- ----aCUgCUCGUCC--CCGGAGAGCc -3'
miRNA:   3'- gauaaGGgGGGUAGGaaGGCCUCUCG- -5'
31314 3' -54.8 NC_006623.1 + 124789 0.66 0.924346
Target:  5'- -aAUUCUUUCCAUCCagaaUCCG-AGAGCu -3'
miRNA:   3'- gaUAAGGGGGGUAGGa---AGGCcUCUCG- -5'
31314 3' -54.8 NC_006623.1 + 133571 0.66 0.924346
Target:  5'- gUcgUCCUCCgAgUCUUCUGGAGGGg -3'
miRNA:   3'- gAuaAGGGGGgUaGGAAGGCCUCUCg -5'
31314 3' -54.8 NC_006623.1 + 28048 0.67 0.917036
Target:  5'- ----aCgCCCCAaucgCCUUCCcagaagaguuucucGGAGAGCa -3'
miRNA:   3'- gauaaGgGGGGUa---GGAAGG--------------CCUCUCG- -5'
31314 3' -54.8 NC_006623.1 + 125390 0.68 0.887242
Target:  5'- -aGUUCUgCCCGUUCUcguuagCCGGGGGGa -3'
miRNA:   3'- gaUAAGGgGGGUAGGAa-----GGCCUCUCg -5'
31314 3' -54.8 NC_006623.1 + 130594 0.68 0.865574
Target:  5'- aUGUUCCCagggacgacUCUAUCCgUCCGG-GGGCc -3'
miRNA:   3'- gAUAAGGG---------GGGUAGGaAGGCCuCUCG- -5'
31314 3' -54.8 NC_006623.1 + 145360 0.69 0.83374
Target:  5'- ----gCCCUaCCAUCCUguucgcaCCGGAGGGUu -3'
miRNA:   3'- gauaaGGGG-GGUAGGAa------GGCCUCUCG- -5'
31314 3' -54.8 NC_006623.1 + 73625 0.69 0.83374
Target:  5'- aUcgUCUCCUCGcgUCUaCCGGGGAGCu -3'
miRNA:   3'- gAuaAGGGGGGUa-GGAaGGCCUCUCG- -5'
31314 3' -54.8 NC_006623.1 + 116252 0.69 0.83374
Target:  5'- ----gCCCUaCCAUCCUguucgcaCCGGAGGGUu -3'
miRNA:   3'- gauaaGGGG-GGUAGGAa------GGCCUCUCG- -5'
31314 3' -54.8 NC_006623.1 + 86108 0.69 0.8253
Target:  5'- -gAUUCaaaaaCCCCAUCaccgUgUGGAGAGCa -3'
miRNA:   3'- gaUAAGg----GGGGUAGga--AgGCCUCUCG- -5'
31314 3' -54.8 NC_006623.1 + 88239 0.7 0.789843
Target:  5'- ---cUCUUCUCAUCUUUCCuGGAGGGUu -3'
miRNA:   3'- gauaAGGGGGGUAGGAAGG-CCUCUCG- -5'
31314 3' -54.8 NC_006623.1 + 75839 0.7 0.779665
Target:  5'- ---aUCCCCCCuugcuagAUCCa--UGGAGAGCu -3'
miRNA:   3'- gauaAGGGGGG-------UAGGaagGCCUCUCG- -5'
31314 3' -54.8 NC_006623.1 + 112175 0.75 0.509561
Target:  5'- ----cCCCCCCAaagUUCUUCCacccguGGAGAGCa -3'
miRNA:   3'- gauaaGGGGGGU---AGGAAGG------CCUCUCG- -5'
31314 3' -54.8 NC_006623.1 + 24409 1.12 0.002494
Target:  5'- cCUAUUCCCCCCAUCCUUCCGGAGAGCu -3'
miRNA:   3'- -GAUAAGGGGGGUAGGAAGGCCUCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.