miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31314 5' -53.7 NC_006623.1 + 69598 0.66 0.940586
Target:  5'- cAUGU-UCCCGA--AUACGGGCuGGAACc -3'
miRNA:   3'- -UACGcGGGGCUuuUAUGUCCG-CCUUG- -5'
31314 5' -53.7 NC_006623.1 + 112267 0.67 0.930442
Target:  5'- ---aGCCCCGGAAAagguuCAGGUGGGc- -3'
miRNA:   3'- uacgCGGGGCUUUUau---GUCCGCCUug -5'
31314 5' -53.7 NC_006623.1 + 128930 0.67 0.929908
Target:  5'- cUGCGCUCCG-------GGGUGGAACu -3'
miRNA:   3'- uACGCGGGGCuuuuaugUCCGCCUUG- -5'
31314 5' -53.7 NC_006623.1 + 125092 0.67 0.917519
Target:  5'- uUGCGCCCCu---AUGCAGaaauuuugccgaccGCGGAAg -3'
miRNA:   3'- uACGCGGGGcuuuUAUGUC--------------CGCCUUg -5'
31314 5' -53.7 NC_006623.1 + 15769 0.67 0.913319
Target:  5'- aGUGUGCCCCGuAGcgACAGagaguauCGGAAUa -3'
miRNA:   3'- -UACGCGGGGCuUUuaUGUCc------GCCUUG- -5'
31314 5' -53.7 NC_006623.1 + 110794 0.67 0.907103
Target:  5'- -aGCGCUCCGGAGcUACAGGUcGcACc -3'
miRNA:   3'- uaCGCGGGGCUUUuAUGUCCGcCuUG- -5'
31314 5' -53.7 NC_006623.1 + 128472 0.67 0.900638
Target:  5'- cUGCGCCC----GGUACGGGCGcgcGAACu -3'
miRNA:   3'- uACGCGGGgcuuUUAUGUCCGC---CUUG- -5'
31314 5' -53.7 NC_006623.1 + 53650 0.68 0.886967
Target:  5'- gGUGCGCUUCGuGAAUGCuGGauuaagccuugcCGGAACg -3'
miRNA:   3'- -UACGCGGGGCuUUUAUGuCC------------GCCUUG- -5'
31314 5' -53.7 NC_006623.1 + 102085 0.68 0.886967
Target:  5'- -cGCGCCUaugaUGGAAAUACuGG-GGAGCu -3'
miRNA:   3'- uaCGCGGG----GCUUUUAUGuCCgCCUUG- -5'
31314 5' -53.7 NC_006623.1 + 134463 0.68 0.872337
Target:  5'- -aGCGCCuCCGAAc-UugAaGCGGAACa -3'
miRNA:   3'- uaCGCGG-GGCUUuuAugUcCGCCUUG- -5'
31314 5' -53.7 NC_006623.1 + 116940 0.68 0.871581
Target:  5'- -gGCGCCCuCGAGAGUGCuugauacagauccGGGCGacGCu -3'
miRNA:   3'- uaCGCGGG-GCUUUUAUG-------------UCCGCcuUG- -5'
31314 5' -53.7 NC_006623.1 + 144672 0.68 0.871581
Target:  5'- -gGCGCCCuCGAGAGUGCuugauacagauccGGGCGacGCu -3'
miRNA:   3'- uaCGCGGG-GCUUUUAUG-------------UCCGCcuUG- -5'
31314 5' -53.7 NC_006623.1 + 36988 0.69 0.823157
Target:  5'- -cGCGCCCCGuu-AUGCAGaGUGcAGCu -3'
miRNA:   3'- uaCGCGGGGCuuuUAUGUC-CGCcUUG- -5'
31314 5' -53.7 NC_006623.1 + 24375 1.01 0.013412
Target:  5'- aAUGCGCCCCGAAAAUACAGGCGGAc- -3'
miRNA:   3'- -UACGCGGGGCUUUUAUGUCCGCCUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.