miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31315 5' -50.2 NC_006623.1 + 25118 0.76 0.686293
Target:  5'- ---gGCAGggUUCCGGCGCCauacggGUcGCa -3'
miRNA:   3'- aacaUGUCuuAAGGCCGCGGa-----CAuUG- -5'
31315 5' -50.2 NC_006623.1 + 39316 0.68 0.968539
Target:  5'- -cGUGgaGGAGUUCCGGCcgggggaacugcGCCUGggAACa -3'
miRNA:   3'- aaCAUg-UCUUAAGGCCG------------CGGACa-UUG- -5'
31315 5' -50.2 NC_006623.1 + 147641 0.68 0.968539
Target:  5'- cUGuUAUAGGGca-CGGUGCCUGUAAUa -3'
miRNA:   3'- aAC-AUGUCUUaagGCCGCGGACAUUG- -5'
31315 5' -50.2 NC_006623.1 + 113971 0.68 0.968539
Target:  5'- cUGuUAUAGGGca-CGGUGCCUGUAAUa -3'
miRNA:   3'- aAC-AUGUCUUaagGCCGCGGACAUUG- -5'
31315 5' -50.2 NC_006623.1 + 25256 1.07 0.011149
Target:  5'- gUUGUACAGAAUUCCGGCGCCUGUAACc -3'
miRNA:   3'- -AACAUGUCUUAAGGCCGCGGACAUUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.