miRNA display CGI


Results 1 - 10 of 10 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31317 3' -53.8 NC_006623.1 + 27089 1.06 0.00586
Target:  5'- uCUGCCAGAAUAACCGCGCGCUGACUUa -3'
miRNA:   3'- -GACGGUCUUAUUGGCGCGCGACUGAA- -5'
31317 3' -53.8 NC_006623.1 + 124319 0.69 0.835995
Target:  5'- gCUGCCGGAAUAguggccuggGCCGCG-GCgagGGCc- -3'
miRNA:   3'- -GACGGUCUUAU---------UGGCGCgCGa--CUGaa -5'
31317 3' -53.8 NC_006623.1 + 137293 0.69 0.835995
Target:  5'- gCUGCCGGAAUAguggccuggGCCGCG-GCgagGGCc- -3'
miRNA:   3'- -GACGGUCUUAU---------UGGCGCgCGa--CUGaa -5'
31317 3' -53.8 NC_006623.1 + 143730 0.68 0.883366
Target:  5'- -cGCCAGAGUGGCuCuaGCGC-GACa- -3'
miRNA:   3'- gaCGGUCUUAUUG-GcgCGCGaCUGaa -5'
31317 3' -53.8 NC_006623.1 + 106421 0.68 0.860673
Target:  5'- -gGCCAGGcauAUGACUggaggaaugGCGUGUUGACUUa -3'
miRNA:   3'- gaCGGUCU---UAUUGG---------CGCGCGACUGAA- -5'
31317 3' -53.8 NC_006623.1 + 117881 0.68 0.883366
Target:  5'- -cGCCAGAGUGGCuCuaGCGC-GACa- -3'
miRNA:   3'- gaCGGUCUUAUUG-GcgCGCGaCUGaa -5'
31317 3' -53.8 NC_006623.1 + 137222 0.67 0.910269
Target:  5'- -cGCCAGGAaguuCCGCGCGCguuuCUa -3'
miRNA:   3'- gaCGGUCUUauu-GGCGCGCGacu-GAa -5'
31317 3' -53.8 NC_006623.1 + 146618 0.67 0.903916
Target:  5'- -gGCCGGGAcuACCGCGUGCgcACUc -3'
miRNA:   3'- gaCGGUCUUauUGGCGCGCGacUGAa -5'
31317 3' -53.8 NC_006623.1 + 114994 0.67 0.903916
Target:  5'- -gGCCGGGAcuACCGCGUGCgcACUc -3'
miRNA:   3'- gaCGGUCUUauUGGCGCGCGacUGAa -5'
31317 3' -53.8 NC_006623.1 + 42121 0.66 0.927807
Target:  5'- aCUGCuauuCAGAG-AGCCGCGUGCgGAUa- -3'
miRNA:   3'- -GACG----GUCUUaUUGGCGCGCGaCUGaa -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.