miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31317 5' -53.6 NC_006623.1 + 27054 1.1 0.003909
Target:  5'- gAGAAAUUGCAGCGGCGGCACUACCGGc -3'
miRNA:   3'- -UCUUUAACGUCGCCGCCGUGAUGGCC- -5'
31317 5' -53.6 NC_006623.1 + 124332 0.74 0.637431
Target:  5'- ------cGCGuCGGCGGcCGCUGCCGGa -3'
miRNA:   3'- ucuuuaaCGUcGCCGCC-GUGAUGGCC- -5'
31317 5' -53.6 NC_006623.1 + 137280 0.74 0.637431
Target:  5'- ------cGCGuCGGCGGcCGCUGCCGGa -3'
miRNA:   3'- ucuuuaaCGUcGCCGCC-GUGAUGGCC- -5'
31317 5' -53.6 NC_006623.1 + 148606 0.72 0.699609
Target:  5'- gAGAAGUUucGCGGCGGCGGUugcGCgCGGu -3'
miRNA:   3'- -UCUUUAA--CGUCGCCGCCGugaUG-GCC- -5'
31317 5' -53.6 NC_006623.1 + 113006 0.72 0.699609
Target:  5'- gAGAAGUUucGCGGCGGCGGUugcGCgCGGu -3'
miRNA:   3'- -UCUUUAA--CGUCGCCGCCGugaUG-GCC- -5'
31317 5' -53.6 NC_006623.1 + 121669 0.72 0.740006
Target:  5'- gGGGGAUaGCAaaugGCGGCGGC---GCCGGa -3'
miRNA:   3'- -UCUUUAaCGU----CGCCGCCGugaUGGCC- -5'
31317 5' -53.6 NC_006623.1 + 139943 0.72 0.740006
Target:  5'- gGGGGAUaGCAaaugGCGGCGGC---GCCGGa -3'
miRNA:   3'- -UCUUUAaCGU----CGCCGCCGugaUGGCC- -5'
31317 5' -53.6 NC_006623.1 + 87196 0.71 0.794717
Target:  5'- -cAGGUUGCAGCagagguuucgaaaaGGCGGCACcACCa- -3'
miRNA:   3'- ucUUUAACGUCG--------------CCGCCGUGaUGGcc -5'
31317 5' -53.6 NC_006623.1 + 39589 0.7 0.810156
Target:  5'- uGGGAUaGCGGUGGUGGUgagcauuauuuuaggACUGCUGGc -3'
miRNA:   3'- uCUUUAaCGUCGCCGCCG---------------UGAUGGCC- -5'
31317 5' -53.6 NC_006623.1 + 137735 0.7 0.844496
Target:  5'- ------cGCAGCGGCGGUaggacuguggaccgcGCUGUCGGa -3'
miRNA:   3'- ucuuuaaCGUCGCCGCCG---------------UGAUGGCC- -5'
31317 5' -53.6 NC_006623.1 + 123876 0.7 0.844496
Target:  5'- ------cGCAGCGGCGGUaggacuguggaccgcGCUGUCGGa -3'
miRNA:   3'- ucuuuaaCGUCGCCGCCG---------------UGAUGGCC- -5'
31317 5' -53.6 NC_006623.1 + 139573 0.69 0.880008
Target:  5'- aAGggGggGgGGCGGCGGgAUguCCGGc -3'
miRNA:   3'- -UCuuUaaCgUCGCCGCCgUGauGGCC- -5'
31317 5' -53.6 NC_006623.1 + 25196 0.69 0.880008
Target:  5'- -uAGGUUGUGG-GGCGGCACauCCGGc -3'
miRNA:   3'- ucUUUAACGUCgCCGCCGUGauGGCC- -5'
31317 5' -53.6 NC_006623.1 + 122039 0.69 0.880008
Target:  5'- aAGggGggGgGGCGGCGGgAUguCCGGc -3'
miRNA:   3'- -UCuuUaaCgUCGCCGCCgUGauGGCC- -5'
31317 5' -53.6 NC_006623.1 + 132775 0.69 0.887106
Target:  5'- -----gUGaCGGCGGCGGUGCU-CUGGc -3'
miRNA:   3'- ucuuuaAC-GUCGCCGCCGUGAuGGCC- -5'
31317 5' -53.6 NC_006623.1 + 121531 0.67 0.930063
Target:  5'- cGuuAUUGCGGUGcGCGGCAC--CCGc -3'
miRNA:   3'- uCuuUAACGUCGC-CGCCGUGauGGCc -5'
31317 5' -53.6 NC_006623.1 + 140081 0.67 0.930063
Target:  5'- cGuuAUUGCGGUGcGCGGCAC--CCGc -3'
miRNA:   3'- uCuuUAACGUCGC-CGCCGUGauGGCc -5'
31317 5' -53.6 NC_006623.1 + 144830 0.67 0.940116
Target:  5'- aAGAcgagGCGGcCGGCGGaCGacUUGCCGGu -3'
miRNA:   3'- -UCUuuaaCGUC-GCCGCC-GU--GAUGGCC- -5'
31317 5' -53.6 NC_006623.1 + 144329 0.67 0.944774
Target:  5'- uGGAAGccGCAGCGaaagagccaccuGCGGCAaccCCGGa -3'
miRNA:   3'- -UCUUUaaCGUCGC------------CGCCGUgauGGCC- -5'
31317 5' -53.6 NC_006623.1 + 113576 0.67 0.944774
Target:  5'- uGGGGcaUGCGcGCGGCcggccuccagGGCAUUGCCGu -3'
miRNA:   3'- -UCUUuaACGU-CGCCG----------CCGUGAUGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.