miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31318 5' -47.4 NC_006623.1 + 112802 0.66 0.999781
Target:  5'- gUGCUgUGAGuCUCAGAGgUUUCa-- -3'
miRNA:   3'- gACGAgACUUuGAGUCUUgAGAGauc -5'
31318 5' -47.4 NC_006623.1 + 91464 0.66 0.999745
Target:  5'- aCUGUUCcacuuaguggaccggUGAAACUUAGAucacaGC-CUCUAGa -3'
miRNA:   3'- -GACGAG---------------ACUUUGAGUCU-----UGaGAGAUC- -5'
31318 5' -47.4 NC_006623.1 + 102318 0.66 0.999719
Target:  5'- cCUGCUCUGcAACUC-GAAUUCcaUCUu- -3'
miRNA:   3'- -GACGAGACuUUGAGuCUUGAG--AGAuc -5'
31318 5' -47.4 NC_006623.1 + 110639 0.66 0.999549
Target:  5'- gUGCUCgGAGACgcc-AGCUCUCUGa -3'
miRNA:   3'- gACGAGaCUUUGagucUUGAGAGAUc -5'
31318 5' -47.4 NC_006623.1 + 144005 0.66 0.999549
Target:  5'- -gGCUCUGcGAACUguGcGCUCUCc-- -3'
miRNA:   3'- gaCGAGAC-UUUGAguCuUGAGAGauc -5'
31318 5' -47.4 NC_006623.1 + 117607 0.66 0.999549
Target:  5'- -gGCUCUGcGAACUguGcGCUCUCc-- -3'
miRNA:   3'- gaCGAGAC-UUUGAguCuUGAGAGauc -5'
31318 5' -47.4 NC_006623.1 + 77249 0.67 0.998926
Target:  5'- gCUGuUUCUGGGAUUaaCGGGauACUCUCUGGu -3'
miRNA:   3'- -GAC-GAGACUUUGA--GUCU--UGAGAGAUC- -5'
31318 5' -47.4 NC_006623.1 + 28518 0.68 0.998071
Target:  5'- -aGUUCUGAGuUUCAGAgcagGCUCUCg-- -3'
miRNA:   3'- gaCGAGACUUuGAGUCU----UGAGAGauc -5'
31318 5' -47.4 NC_006623.1 + 28552 0.7 0.991584
Target:  5'- -aGUUCUGAGAUUCAGAGCagaccCUCg-- -3'
miRNA:   3'- gaCGAGACUUUGAGUCUUGa----GAGauc -5'
31318 5' -47.4 NC_006623.1 + 28296 0.7 0.987326
Target:  5'- aCUGC-CUGAGcaucuAC-CGGAACUCUUUGGc -3'
miRNA:   3'- -GACGaGACUU-----UGaGUCUUGAGAGAUC- -5'
31318 5' -47.4 NC_006623.1 + 28720 1.02 0.046963
Target:  5'- uCUGCUCUGAAuCUCAGAACUCUCUAGg -3'
miRNA:   3'- -GACGAGACUUuGAGUCUUGAGAGAUC- -5'
31318 5' -47.4 NC_006623.1 + 28686 1.11 0.012846
Target:  5'- cCUGCUCUGAAACUCAGAACUCUCUAGg -3'
miRNA:   3'- -GACGAGACUUUGAGUCUUGAGAGAUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.