Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3132 | 3' | -51.9 | NC_001493.1 | + | 8964 | 0.96 | 0.047419 |
Target: 5'- aUCUCGAACUGUCGUACACG-AUCCCAc -3' miRNA: 3'- -AGAGCUUGACAGCAUGUGCcUAGGGU- -5' |
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3132 | 3' | -51.9 | NC_001493.1 | + | 18785 | 0.72 | 0.832316 |
Target: 5'- gCUCGAcgcgGCcGUCGUACuCGGggCCCGu -3' miRNA: 3'- aGAGCU----UGaCAGCAUGuGCCuaGGGU- -5' |
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3132 | 3' | -51.9 | NC_001493.1 | + | 28604 | 0.69 | 0.924983 |
Target: 5'- aUCUCGGucgcgugcCUGUCGgugagcGCACGGAUCUg- -3' miRNA: 3'- -AGAGCUu-------GACAGCa-----UGUGCCUAGGgu -5' |
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3132 | 3' | -51.9 | NC_001493.1 | + | 29719 | 0.66 | 0.98689 |
Target: 5'- cUCUCGAGCUGgcgguucgccuUCGagagguccauCACGGugGUCCCGa -3' miRNA: 3'- -AGAGCUUGAC-----------AGCau--------GUGCC--UAGGGU- -5' |
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3132 | 3' | -51.9 | NC_001493.1 | + | 31479 | 0.76 | 0.592923 |
Target: 5'- gUUCGuAugUGUCGUGCgggAUGGGUCCCAu -3' miRNA: 3'- aGAGC-UugACAGCAUG---UGCCUAGGGU- -5' |
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3132 | 3' | -51.9 | NC_001493.1 | + | 46605 | 0.67 | 0.964935 |
Target: 5'- gUUCGAGaCUGUCGUAaauguuCGGGcaugUCCCGa -3' miRNA: 3'- aGAGCUU-GACAGCAUgu----GCCU----AGGGU- -5' |
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3132 | 3' | -51.9 | NC_001493.1 | + | 50253 | 0.66 | 0.985185 |
Target: 5'- aUCcCGAAUaagUGgauGUACugGGAUCCCu -3' miRNA: 3'- -AGaGCUUG---ACag-CAUGugCCUAGGGu -5' |
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3132 | 3' | -51.9 | NC_001493.1 | + | 51600 | 0.69 | 0.913362 |
Target: 5'- gUCUUGAACgggGUCaugaACAUGGGUCUCAg -3' miRNA: 3'- -AGAGCUUGa--CAGca--UGUGCCUAGGGU- -5' |
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3132 | 3' | -51.9 | NC_001493.1 | + | 60458 | 0.66 | 0.98689 |
Target: 5'- --gUGGACggUGUCGUGCACGGGgggugucaUCCUc -3' miRNA: 3'- agaGCUUG--ACAGCAUGUGCCU--------AGGGu -5' |
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3132 | 3' | -51.9 | NC_001493.1 | + | 67018 | 0.66 | 0.978349 |
Target: 5'- aCUCGAugUGuuUCGUGCcgaucagccccgggAUGGAUgCCAg -3' miRNA: 3'- aGAGCUugAC--AGCAUG--------------UGCCUAgGGU- -5' |
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3132 | 3' | -51.9 | NC_001493.1 | + | 94947 | 0.73 | 0.748511 |
Target: 5'- cCUCGGGCUGUUaaaugACACGGAgcuccgCCCGg -3' miRNA: 3'- aGAGCUUGACAGca---UGUGCCUa-----GGGU- -5' |
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3132 | 3' | -51.9 | NC_001493.1 | + | 124518 | 1.1 | 0.006353 |
Target: 5'- aUCUCGAACUGUCGUACACGGAUCCCAc -3' miRNA: 3'- -AGAGCUUGACAGCAUGUGCCUAGGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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