Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 31320 | 3' | -54.8 | NC_006623.1 | + | 115665 | 0.66 | 0.919104 |
|
Target: 5'- gCAUGCAGGCaCGUCcGCaGAgGGCCg-- -3' miRNA: 3'- -GUACGUCCG-GUAG-UGcCUaUCGGagu -5' |
|||||||
| 31320 | 3' | -54.8 | NC_006623.1 | + | 145947 | 0.66 | 0.919104 |
|
Target: 5'- gCAUGCAGGCaCGUCcGCaGAgGGCCg-- -3' miRNA: 3'- -GUACGUCCG-GUAG-UGcCUaUCGGagu -5' |
|||||||
| 31320 | 3' | -54.8 | NC_006623.1 | + | 69859 | 0.66 | 0.907022 |
|
Target: 5'- -uUGuCGGGUC-UUGCGGAgacAGCCUCAu -3' miRNA: 3'- guAC-GUCCGGuAGUGCCUa--UCGGAGU- -5' |
|||||||
| 31320 | 3' | -54.8 | NC_006623.1 | + | 142061 | 0.68 | 0.840926 |
|
Target: 5'- aUAUGCAGGCCG-CAUGGGc-GCCa-- -3' miRNA: 3'- -GUACGUCCGGUaGUGCCUauCGGagu -5' |
|||||||
| 31320 | 3' | -54.8 | NC_006623.1 | + | 119551 | 0.68 | 0.840926 |
|
Target: 5'- aUAUGCAGGCCG-CAUGGGc-GCCa-- -3' miRNA: 3'- -GUACGUCCGGUaGUGCCUauCGGagu -5' |
|||||||
| 31320 | 3' | -54.8 | NC_006623.1 | + | 15234 | 0.72 | 0.629853 |
|
Target: 5'- gAUGCGGGCCGUgCGCGuGGcauugauccaauuaaUAGCCUUAu -3' miRNA: 3'- gUACGUCCGGUA-GUGC-CU---------------AUCGGAGU- -5' |
|||||||
| 31320 | 3' | -54.8 | NC_006623.1 | + | 115895 | 0.72 | 0.594302 |
|
Target: 5'- -cUGCGGGUCcgGUCGCGGAaUAGCUUCc -3' miRNA: 3'- guACGUCCGG--UAGUGCCU-AUCGGAGu -5' |
|||||||
| 31320 | 3' | -54.8 | NC_006623.1 | + | 63624 | 0.76 | 0.426482 |
|
Target: 5'- aAUGCAGGCCAU-AUGGAaAGCCgUCAa -3' miRNA: 3'- gUACGUCCGGUAgUGCCUaUCGG-AGU- -5' |
|||||||
| 31320 | 3' | -54.8 | NC_006623.1 | + | 65965 | 1.09 | 0.003207 |
|
Target: 5'- cCAUGCAGGCCAUCACGGAUAGCCUCAa -3' miRNA: 3'- -GUACGUCCGGUAGUGCCUAUCGGAGU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home