miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31320 5' -50.5 NC_006623.1 + 74533 0.66 0.994208
Target:  5'- --aGGuaCUGUACGCAUCGGCaUGCAa -3'
miRNA:   3'- gaaCUucGACAUGUGUGGCUG-ACGUc -5'
31320 5' -50.5 NC_006623.1 + 113135 0.66 0.993667
Target:  5'- cCUUGAAGUuacugGcggagagcaucagaaUACuGCACCGugUGCAGa -3'
miRNA:   3'- -GAACUUCGa----C---------------AUG-UGUGGCugACGUC- -5'
31320 5' -50.5 NC_006623.1 + 148477 0.66 0.993667
Target:  5'- cCUUGAAGUuacugGcggagagcaucagaaUACuGCACCGugUGCAGa -3'
miRNA:   3'- -GAACUUCGa----C---------------AUG-UGUGGCugACGUC- -5'
31320 5' -50.5 NC_006623.1 + 140881 0.66 0.993284
Target:  5'- ---uGAGUUGUuuggGCcCACCGACgUGCAGg -3'
miRNA:   3'- gaacUUCGACA----UGuGUGGCUG-ACGUC- -5'
31320 5' -50.5 NC_006623.1 + 11493 0.66 0.993284
Target:  5'- --cGAAGUgaaUGCAgCAUCGGCUGCAa -3'
miRNA:   3'- gaaCUUCGac-AUGU-GUGGCUGACGUc -5'
31320 5' -50.5 NC_006623.1 + 147470 0.66 0.993284
Target:  5'- --gGAAGCuUGUaauGCugGCCGGCaGCAu -3'
miRNA:   3'- gaaCUUCG-ACA---UGugUGGCUGaCGUc -5'
31320 5' -50.5 NC_006623.1 + 114142 0.66 0.993284
Target:  5'- --gGAAGCuUGUaauGCugGCCGGCaGCAu -3'
miRNA:   3'- gaaCUUCG-ACA---UGugUGGCUGaCGUc -5'
31320 5' -50.5 NC_006623.1 + 120731 0.66 0.993284
Target:  5'- ---uGAGUUGUuuggGCcCACCGACgUGCAGg -3'
miRNA:   3'- gaacUUCGACA----UGuGUGGCUG-ACGUC- -5'
31320 5' -50.5 NC_006623.1 + 103368 0.66 0.992354
Target:  5'- -aUGAGGCUGgaguuuuagggaaacAUAUAUUGACUGCAa -3'
miRNA:   3'- gaACUUCGACa--------------UGUGUGGCUGACGUc -5'
31320 5' -50.5 NC_006623.1 + 7354 0.71 0.904
Target:  5'- --aGGAGCUGU-CugGCCGACgaaaacaGCAGc -3'
miRNA:   3'- gaaCUUCGACAuGugUGGCUGa------CGUC- -5'
31320 5' -50.5 NC_006623.1 + 65931 1.09 0.008372
Target:  5'- cCUUGAAGCUGUACACACCGACUGCAGu -3'
miRNA:   3'- -GAACUUCGACAUGUGUGGCUGACGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.