miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31321 5' -48.7 NC_006623.1 + 38110 0.66 0.998046
Target:  5'- -aGCCAUG-GAGucggcgacaugcUCCGGCCAGUu -3'
miRNA:   3'- ucUGGUACuCUUuuua--------AGGCCGGUCA- -5'
31321 5' -48.7 NC_006623.1 + 22332 0.66 0.997615
Target:  5'- cAGugCGUGAGAuAAAguugUCUGG-CAGUu -3'
miRNA:   3'- -UCugGUACUCUuUUUa---AGGCCgGUCA- -5'
31321 5' -48.7 NC_006623.1 + 46826 0.67 0.996626
Target:  5'- aGGACgCAaGGGAAAGGUUCgGGuUCAGUu -3'
miRNA:   3'- -UCUG-GUaCUCUUUUUAAGgCC-GGUCA- -5'
31321 5' -48.7 NC_006623.1 + 137543 0.75 0.816111
Target:  5'- cGGACCugcccgGAGGGAGAUUCUGGCgGGc -3'
miRNA:   3'- -UCUGGua----CUCUUUUUAAGGCCGgUCa -5'
31321 5' -48.7 NC_006623.1 + 124069 0.75 0.816111
Target:  5'- cGGACCugcccgGAGGGAGAUUCUGGCgGGc -3'
miRNA:   3'- -UCUGGua----CUCUUUUUAAGGCCGgUCa -5'
31321 5' -48.7 NC_006623.1 + 39311 0.81 0.533354
Target:  5'- aGGGUCGUG-GAGGAGUUCCGGCCGGg -3'
miRNA:   3'- -UCUGGUACuCUUUUUAAGGCCGGUCa -5'
31321 5' -48.7 NC_006623.1 + 66318 1.08 0.01572
Target:  5'- aAGACCAUGAGAAAAAUUCCGGCCAGUu -3'
miRNA:   3'- -UCUGGUACUCUUUUUAAGGCCGGUCA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.