miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31323 3' -61.3 NC_006623.1 + 129480 0.66 0.683516
Target:  5'- cGUAcuCGUCCaGCGGACCgGCGCa-- -3'
miRNA:   3'- aCGUu-GCGGGcUGCCUGGgCGCGcau -5'
31323 3' -61.3 NC_006623.1 + 128477 0.66 0.683516
Target:  5'- gGCGccuGCGCCCGguACGGGCgCGCGa--- -3'
miRNA:   3'- aCGU---UGCGGGC--UGCCUGgGCGCgcau -5'
31323 3' -61.3 NC_006623.1 + 110167 0.66 0.66778
Target:  5'- uUGCGuaauauuucacGCGCCCuGCGGACacgaauuaaaaauaCGCGCGg- -3'
miRNA:   3'- -ACGU-----------UGCGGGcUGCCUGg-------------GCGCGCau -5'
31323 3' -61.3 NC_006623.1 + 146571 0.66 0.648017
Target:  5'- aGCGGCGCggccgccagcgccucCCGAuuCGGGaCCGCGUGUAc -3'
miRNA:   3'- aCGUUGCG---------------GGCU--GCCUgGGCGCGCAU- -5'
31323 3' -61.3 NC_006623.1 + 115041 0.66 0.648017
Target:  5'- aGCGGCGCggccgccagcgccucCCGAuuCGGGaCCGCGUGUAc -3'
miRNA:   3'- aCGUUGCG---------------GGCU--GCCUgGGCGCGCAU- -5'
31323 3' -61.3 NC_006623.1 + 148219 0.67 0.624243
Target:  5'- gGCAAUGCCCuggaGGCcGGCCgCGCGCa-- -3'
miRNA:   3'- aCGUUGCGGG----CUGcCUGG-GCGCGcau -5'
31323 3' -61.3 NC_006623.1 + 113393 0.67 0.624243
Target:  5'- gGCAAUGCCCuggaGGCcGGCCgCGCGCa-- -3'
miRNA:   3'- aCGUUGCGGG----CUGcCUGG-GCGCGcau -5'
31323 3' -61.3 NC_006623.1 + 128303 0.67 0.603464
Target:  5'- cGC-GCGCCCGuacCGGGCgcaggcgccguuuCCGCGCGc- -3'
miRNA:   3'- aCGuUGCGGGCu--GCCUG-------------GGCGCGCau -5'
31323 3' -61.3 NC_006623.1 + 120303 0.68 0.554451
Target:  5'- gGU--UGCCCGugGGACUaaaaccaguuacuUGCGCGUGg -3'
miRNA:   3'- aCGuuGCGGGCugCCUGG-------------GCGCGCAU- -5'
31323 3' -61.3 NC_006623.1 + 141309 0.68 0.554451
Target:  5'- gGU--UGCCCGugGGACUaaaaccaguuacuUGCGCGUGg -3'
miRNA:   3'- aCGuuGCGGGCugCCUGG-------------GCGCGCAU- -5'
31323 3' -61.3 NC_006623.1 + 136728 0.68 0.536115
Target:  5'- cUGCAGCGCgCG-CGGggaaucugacaACCaCGCGUGUAa -3'
miRNA:   3'- -ACGUUGCGgGCuGCC-----------UGG-GCGCGCAU- -5'
31323 3' -61.3 NC_006623.1 + 82474 0.69 0.517048
Target:  5'- gUGUAcUGCCUGACGG-CgCCGUGCGg- -3'
miRNA:   3'- -ACGUuGCGGGCUGCCuG-GGCGCGCau -5'
31323 3' -61.3 NC_006623.1 + 137583 0.69 0.48621
Target:  5'- uUGCGAUauuuucuuuugGCCCGaucuggccGCGGugaucguacaggccGCCCGCGCGUAu -3'
miRNA:   3'- -ACGUUG-----------CGGGC--------UGCC--------------UGGGCGCGCAU- -5'
31323 3' -61.3 NC_006623.1 + 124029 0.69 0.48621
Target:  5'- uUGCGAUauuuucuuuugGCCCGaucuggccGCGGugaucguacaggccGCCCGCGCGUAu -3'
miRNA:   3'- -ACGUUG-----------CGGGC--------UGCC--------------UGGGCGCGCAU- -5'
31323 3' -61.3 NC_006623.1 + 138156 0.69 0.461643
Target:  5'- cGCGA-GUCCGGCGG-CCgGCGCGc- -3'
miRNA:   3'- aCGUUgCGGGCUGCCuGGgCGCGCau -5'
31323 3' -61.3 NC_006623.1 + 123456 0.69 0.461643
Target:  5'- cGCGA-GUCCGGCGG-CCgGCGCGc- -3'
miRNA:   3'- aCGUUgCGGGCUGCCuGGgCGCGCau -5'
31323 3' -61.3 NC_006623.1 + 111828 0.73 0.308035
Target:  5'- gGCAGCgGCCCGGCGGGgcauggcgauaaauUUCGCGCGa- -3'
miRNA:   3'- aCGUUG-CGGGCUGCCU--------------GGGCGCGCau -5'
31323 3' -61.3 NC_006623.1 + 123630 0.73 0.283441
Target:  5'- aGCAGCGCgCCGGCcgccGGACUCGCgGCGa- -3'
miRNA:   3'- aCGUUGCG-GGCUG----CCUGGGCG-CGCau -5'
31323 3' -61.3 NC_006623.1 + 137982 0.73 0.283441
Target:  5'- aGCAGCGCgCCGGCcgccGGACUCGCgGCGa- -3'
miRNA:   3'- aCGUUGCG-GGCUG----CCUGGGCG-CGCau -5'
31323 3' -61.3 NC_006623.1 + 110382 1.06 0.001445
Target:  5'- aUGCAACGCCCGACGGACCCGCGCGUAu -3'
miRNA:   3'- -ACGUUGCGGGCUGCCUGGGCGCGCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.