miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31323 5' -50.5 NC_006623.1 + 115676 0.66 0.994208
Target:  5'- cGUCCGCagAGGGCcGCGU--AGgcgUACg -3'
miRNA:   3'- aCAGGCG--UCCCG-CGCAcuUUauaAUG- -5'
31323 5' -50.5 NC_006623.1 + 145936 0.66 0.994208
Target:  5'- cGUCCGCagAGGGCcGCGU--AGgcgUACg -3'
miRNA:   3'- aCAGGCG--UCCCG-CGCAcuUUauaAUG- -5'
31323 5' -50.5 NC_006623.1 + 15637 0.66 0.993667
Target:  5'- cGUCgCGCucucuuuuuugugcaAGGGCGUGUGGAGc----- -3'
miRNA:   3'- aCAG-GCG---------------UCCCGCGCACUUUauaaug -5'
31323 5' -50.5 NC_006623.1 + 72816 0.69 0.94815
Target:  5'- gGUCUcCAGGGCGCugGUGuauAGUAUUAUu -3'
miRNA:   3'- aCAGGcGUCCCGCG--CACu--UUAUAAUG- -5'
31323 5' -50.5 NC_006623.1 + 127782 0.73 0.808192
Target:  5'- cGUCCGUGGcaacuaGCGCGUGcAAUGUUGCc -3'
miRNA:   3'- aCAGGCGUCc-----CGCGCACuUUAUAAUG- -5'
31323 5' -50.5 NC_006623.1 + 110345 1.11 0.006081
Target:  5'- gUGUCCGCAGGGCGCGUGAAAUAUUACg -3'
miRNA:   3'- -ACAGGCGUCCCGCGCACUUUAUAAUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.