miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31324 3' -50.6 NC_006623.1 + 57299 0.66 0.988572
Target:  5'- cGCAgCUGACCACAagGCGg--CAGCu -3'
miRNA:   3'- aCGUaGGCUGGUGUcaCGUuaaGUCG- -5'
31324 3' -50.6 NC_006623.1 + 13357 0.67 0.985278
Target:  5'- aUGCAUCCaAUCGCAaUGCGuucucgCGGCa -3'
miRNA:   3'- -ACGUAGGcUGGUGUcACGUuaa---GUCG- -5'
31324 3' -50.6 NC_006623.1 + 125102 0.67 0.983381
Target:  5'- aUGCAgaaauuuugCCGACCGCGGaagGCG--UCgAGCg -3'
miRNA:   3'- -ACGUa--------GGCUGGUGUCa--CGUuaAG-UCG- -5'
31324 3' -50.6 NC_006623.1 + 63586 0.67 0.983381
Target:  5'- cUGCAaUCCGACaCACAGaaaaaGCuAUUCGGg -3'
miRNA:   3'- -ACGU-AGGCUG-GUGUCa----CGuUAAGUCg -5'
31324 3' -50.6 NC_006623.1 + 147 0.67 0.978804
Target:  5'- cUGCGUUCGugCGCAGcacccccUGCcccgCGGCa -3'
miRNA:   3'- -ACGUAGGCugGUGUC-------ACGuuaaGUCG- -5'
31324 3' -50.6 NC_006623.1 + 111260 0.68 0.967928
Target:  5'- gUGuCGUCUGAUgACGGUGCGuucguuGUcCAGCa -3'
miRNA:   3'- -AC-GUAGGCUGgUGUCACGU------UAaGUCG- -5'
31324 3' -50.6 NC_006623.1 + 9645 0.7 0.929065
Target:  5'- aUGCAUCCc-CCACgaGGUGCAGaUgAGCa -3'
miRNA:   3'- -ACGUAGGcuGGUG--UCACGUUaAgUCG- -5'
31324 3' -50.6 NC_006623.1 + 94763 0.7 0.921731
Target:  5'- aGCGUCgGACUcgcacgaagacuguACGGaUGCGAUcUCAGCg -3'
miRNA:   3'- aCGUAGgCUGG--------------UGUC-ACGUUA-AGUCG- -5'
31324 3' -50.6 NC_006623.1 + 121521 0.73 0.836572
Target:  5'- cGCGUCCGugCguuauuGCGGUGCg---CGGCa -3'
miRNA:   3'- aCGUAGGCugG------UGUCACGuuaaGUCG- -5'
31324 3' -50.6 NC_006623.1 + 140091 0.73 0.836572
Target:  5'- cGCGUCCGugCguuauuGCGGUGCg---CGGCa -3'
miRNA:   3'- aCGUAGGCugG------UGUCACGuuaaGUCG- -5'
31324 3' -50.6 NC_006623.1 + 81315 0.74 0.771685
Target:  5'- uUGCGUCUGGgUAUGGUGCAGgggCAGUa -3'
miRNA:   3'- -ACGUAGGCUgGUGUCACGUUaa-GUCG- -5'
31324 3' -50.6 NC_006623.1 + 81029 0.75 0.700127
Target:  5'- gGC-UCCGACCGCAGgaGCAAUcUCAGa -3'
miRNA:   3'- aCGuAGGCUGGUGUCa-CGUUA-AGUCg -5'
31324 3' -50.6 NC_006623.1 + 111472 1.14 0.00433
Target:  5'- cUGCAUCCGACCACAGUGCAAUUCAGCa -3'
miRNA:   3'- -ACGUAGGCUGGUGUCACGUUAAGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.