miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31325 3' -51.6 NC_006623.1 + 122063 0.66 0.974537
Target:  5'- aGCGCAGgcggcaAGGUGCcGCUGuCGCc-- -3'
miRNA:   3'- cCGUGUCaa----UCCACGaUGAC-GCGaau -5'
31325 3' -51.6 NC_006623.1 + 25203 0.66 0.977166
Target:  5'- cGGCAguGgcGGGcGCaUAUUGCGCa-- -3'
miRNA:   3'- -CCGUguCaaUCCaCG-AUGACGCGaau -5'
31325 3' -51.6 NC_006623.1 + 139549 0.66 0.974537
Target:  5'- aGCGCAGgcggcaAGGUGCcGCUGuCGCc-- -3'
miRNA:   3'- cCGUGUCaa----UCCACGaUGAC-GCGaau -5'
31325 3' -51.6 NC_006623.1 + 129597 0.67 0.96863
Target:  5'- --aGCAGUUAGGUauGUUGCguggGCGCUc- -3'
miRNA:   3'- ccgUGUCAAUCCA--CGAUGa---CGCGAau -5'
31325 3' -51.6 NC_006623.1 + 112886 1.1 0.005369
Target:  5'- gGGCACAGUUAGGUGCUACUGCGCUUAg -3'
miRNA:   3'- -CCGUGUCAAUCCACGAUGACGCGAAU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.