miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31325 5' -46.1 NC_006623.1 + 141833 0.66 0.999909
Target:  5'- -gUGACCUuucuaGAGUaggcacacaccccGGCACCgAAUUGCa -3'
miRNA:   3'- gaAUUGGA-----CUCA-------------UCGUGGaUUAACGc -5'
31325 5' -46.1 NC_006623.1 + 34803 0.68 0.998998
Target:  5'- --gAACCUaGGGUuGCggaaACCUGAUUGCa -3'
miRNA:   3'- gaaUUGGA-CUCAuCG----UGGAUUAACGc -5'
31325 5' -46.1 NC_006623.1 + 112706 0.71 0.992969
Target:  5'- aCUUAGCUaagcGcAGUAGCACCUAAcUGUGc -3'
miRNA:   3'- -GAAUUGGa---C-UCAUCGUGGAUUaACGC- -5'
31325 5' -46.1 NC_006623.1 + 45760 0.72 0.989208
Target:  5'- ----cCCUGAGUAGUccACCUGGggGCa -3'
miRNA:   3'- gaauuGGACUCAUCG--UGGAUUaaCGc -5'
31325 5' -46.1 NC_006623.1 + 112852 1.12 0.017027
Target:  5'- gCUUAACCUGAGUAGCACCUAAUUGCGg -3'
miRNA:   3'- -GAAUUGGACUCAUCGUGGAUUAACGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.