miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31328 3' -51.8 NC_006623.1 + 146473 1.1 0.006854
Target:  5'- aUGCUCCUCGUCGUCGUCUUCUUCAGAc -3'
miRNA:   3'- -ACGAGGAGCAGCAGCAGAAGAAGUCU- -5'
31328 3' -51.8 NC_006623.1 + 115139 1.1 0.006854
Target:  5'- aUGCUCCUCGUCGUCGUCUUCUUCAGAc -3'
miRNA:   3'- -ACGAGGAGCAGCAGCAGAAGAAGUCU- -5'
31328 3' -51.8 NC_006623.1 + 114930 0.78 0.534802
Target:  5'- -uCUUCUCGUCccCGUCUUCUUCAGAu -3'
miRNA:   3'- acGAGGAGCAGcaGCAGAAGAAGUCU- -5'
31328 3' -51.8 NC_006623.1 + 146682 0.78 0.534802
Target:  5'- -uCUUCUCGUCccCGUCUUCUUCAGAu -3'
miRNA:   3'- acGAGGAGCAGcaGCAGAAGAAGUCU- -5'
31328 3' -51.8 NC_006623.1 + 9003 0.72 0.851704
Target:  5'- gUGCUCCUCGgUGUUGUcCUUCcaCGGAa -3'
miRNA:   3'- -ACGAGGAGCaGCAGCA-GAAGaaGUCU- -5'
31328 3' -51.8 NC_006623.1 + 134869 0.67 0.979703
Target:  5'- cGUUCUUCGUCGUCuugcgagaccguGUCUaaUUUUCGGu -3'
miRNA:   3'- aCGAGGAGCAGCAG------------CAGA--AGAAGUCu -5'
31328 3' -51.8 NC_006623.1 + 133646 0.67 0.977349
Target:  5'- gUGCucggugUCCUCGgggacuUCGUCGUCUUCgg-GGAg -3'
miRNA:   3'- -ACG------AGGAGC------AGCAGCAGAAGaagUCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.