miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31328 5' -50.3 NC_006623.1 + 147391 0.66 0.993335
Target:  5'- aUAUCgGGAGGAGGCGGa-ACGAGGu- -3'
miRNA:   3'- -GUAGaCCUUUUCUGCCccUGCUCUuc -5'
31328 5' -50.3 NC_006623.1 + 114221 0.66 0.993335
Target:  5'- aUAUCgGGAGGAGGCGGa-ACGAGGu- -3'
miRNA:   3'- -GUAGaCCUUUUCUGCCccUGCUCUuc -5'
31328 5' -50.3 NC_006623.1 + 105900 0.67 0.988488
Target:  5'- -uUCUGGAGAGGAUuGGGAacaUGuGggGg -3'
miRNA:   3'- guAGACCUUUUCUGcCCCU---GCuCuuC- -5'
31328 5' -50.3 NC_006623.1 + 130850 0.67 0.986928
Target:  5'- -cUCUGGcacgguAGugGGGGuCGGGGAa -3'
miRNA:   3'- guAGACCuuu---UCugCCCCuGCUCUUc -5'
31328 5' -50.3 NC_006623.1 + 112222 0.67 0.986764
Target:  5'- --aUUGG-AAGGGCGGGGAgcacucaggggacUGGGAGGg -3'
miRNA:   3'- guaGACCuUUUCUGCCCCU-------------GCUCUUC- -5'
31328 5' -50.3 NC_006623.1 + 530 0.68 0.985211
Target:  5'- ---gUGGAgAGAGACGGGGA--AGAAGc -3'
miRNA:   3'- guagACCU-UUUCUGCCCCUgcUCUUC- -5'
31328 5' -50.3 NC_006623.1 + 145955 0.69 0.972257
Target:  5'- aCAUCUGGgcGcgcaugcguggucguAGAugcuagggauccCGGGGACGAGGAu -3'
miRNA:   3'- -GUAGACCuuU---------------UCU------------GCCCCUGCUCUUc -5'
31328 5' -50.3 NC_006623.1 + 115657 0.69 0.972257
Target:  5'- aCAUCUGGgcGcgcaugcguggucguAGAugcuagggauccCGGGGACGAGGAu -3'
miRNA:   3'- -GUAGACCuuU---------------UCU------------GCCCCUGCUCUUc -5'
31328 5' -50.3 NC_006623.1 + 1155 0.69 0.968024
Target:  5'- gGUgUGcGGcacagagcAAAGcGCGGGGGCGAGAGGg -3'
miRNA:   3'- gUAgAC-CU--------UUUC-UGCCCCUGCUCUUC- -5'
31328 5' -50.3 NC_006623.1 + 27790 0.69 0.964732
Target:  5'- gCAUCgGGGAGAGACaGGGauuccgcacGCGuGAAGg -3'
miRNA:   3'- -GUAGaCCUUUUCUGcCCC---------UGCuCUUC- -5'
31328 5' -50.3 NC_006623.1 + 114963 0.7 0.939962
Target:  5'- aGUCUGaAGAAGACGacGACGAGGAGc -3'
miRNA:   3'- gUAGACcUUUUCUGCccCUGCUCUUC- -5'
31328 5' -50.3 NC_006623.1 + 146649 0.7 0.939962
Target:  5'- aGUCUGaAGAAGACGacGACGAGGAGc -3'
miRNA:   3'- gUAGACcUUUUCUGCccCUGCUCUUC- -5'
31328 5' -50.3 NC_006623.1 + 146507 0.96 0.065606
Target:  5'- uCAUCUGaAGAAGACGGGGACGAGAAGa -3'
miRNA:   3'- -GUAGACcUUUUCUGCCCCUGCUCUUC- -5'
31328 5' -50.3 NC_006623.1 + 115105 0.96 0.065606
Target:  5'- uCAUCUGaAGAAGACGGGGACGAGAAGa -3'
miRNA:   3'- -GUAGACcUUUUCUGCCCCUGCUCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.