miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3133 3' -56.7 NC_001493.1 + 79087 0.8 0.206815
Target:  5'- aCCGGGaGCacgucGGGCGGUCUGACCgAGGCCGg -3'
miRNA:   3'- -GGCUC-CG-----CCUGCUAGACUGG-UCUGGU- -5'
3133 3' -56.7 NC_001493.1 + 80557 0.66 0.884845
Target:  5'- aCGAGaCGGAUGAUCUcGGCCuuuCCGu -3'
miRNA:   3'- gGCUCcGCCUGCUAGA-CUGGucuGGU- -5'
3133 3' -56.7 NC_001493.1 + 81421 0.67 0.83172
Target:  5'- cCCGAGGCGGcccuguuacACGAgCaGACCcacGACCu -3'
miRNA:   3'- -GGCUCCGCC---------UGCUaGaCUGGu--CUGGu -5'
3133 3' -56.7 NC_001493.1 + 87933 0.66 0.863291
Target:  5'- cCCGGGGCGuACGAg--GAgCCGGAUCu -3'
miRNA:   3'- -GGCUCCGCcUGCUagaCU-GGUCUGGu -5'
3133 3' -56.7 NC_001493.1 + 87975 0.66 0.863291
Target:  5'- cCCGGGGCGuACGAg--GAgCCGGAUCu -3'
miRNA:   3'- -GGCUCCGCcUGCUagaCU-GGUCUGGu -5'
3133 3' -56.7 NC_001493.1 + 88473 0.8 0.211935
Target:  5'- aCgGAGGCGGACGGggUGAUCGGGCCc -3'
miRNA:   3'- -GgCUCCGCCUGCUagACUGGUCUGGu -5'
3133 3' -56.7 NC_001493.1 + 108857 0.67 0.835013
Target:  5'- aCGAGcagcucucucGCGGugGGUCUGaacuggggguagagcGCCAGACa- -3'
miRNA:   3'- gGCUC----------CGCCugCUAGAC---------------UGGUCUGgu -5'
3133 3' -56.7 NC_001493.1 + 118770 0.73 0.531479
Target:  5'- -aGAGGCGGACGAg--GACCcGGACgAg -3'
miRNA:   3'- ggCUCCGCCUGCUagaCUGG-UCUGgU- -5'
3133 3' -56.7 NC_001493.1 + 119341 0.68 0.769926
Target:  5'- gCGAGGCGcGGCGGUUucgaggugaUGugCGGGuCCAu -3'
miRNA:   3'- gGCUCCGC-CUGCUAG---------ACugGUCU-GGU- -5'
3133 3' -56.7 NC_001493.1 + 124824 0.71 0.631698
Target:  5'- -gGAGGCGGGCGugg-GGCUGGACUAc -3'
miRNA:   3'- ggCUCCGCCUGCuagaCUGGUCUGGU- -5'
3133 3' -56.7 NC_001493.1 + 126618 0.66 0.870687
Target:  5'- cCCGuGGGaCGGACGcUCacacCCAGACCGa -3'
miRNA:   3'- -GGC-UCC-GCCUGCuAGacu-GGUCUGGU- -5'
3133 3' -56.7 NC_001493.1 + 126719 1.1 0.002193
Target:  5'- cCCGAGGCGGACGAUCUGACCAGACCAc -3'
miRNA:   3'- -GGCUCCGCCUGCUAGACUGGUCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.