Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3133 | 3' | -56.7 | NC_001493.1 | + | 11164 | 1.1 | 0.002193 |
Target: 5'- cCCGAGGCGGACGAUCUGACCAGACCAc -3' miRNA: 3'- -GGCUCCGCCUGCUAGACUGGUCUGGU- -5' |
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3133 | 3' | -56.7 | NC_001493.1 | + | 126719 | 1.1 | 0.002193 |
Target: 5'- cCCGAGGCGGACGAUCUGACCAGACCAc -3' miRNA: 3'- -GGCUCCGCCUGCUAGACUGGUCUGGU- -5' |
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3133 | 3' | -56.7 | NC_001493.1 | + | 79087 | 0.8 | 0.206815 |
Target: 5'- aCCGGGaGCacgucGGGCGGUCUGACCgAGGCCGg -3' miRNA: 3'- -GGCUC-CG-----CCUGCUAGACUGG-UCUGGU- -5' |
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3133 | 3' | -56.7 | NC_001493.1 | + | 88473 | 0.8 | 0.211935 |
Target: 5'- aCgGAGGCGGACGGggUGAUCGGGCCc -3' miRNA: 3'- -GgCUCCGCCUGCUagACUGGUCUGGu -5' |
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3133 | 3' | -56.7 | NC_001493.1 | + | 44555 | 0.74 | 0.464798 |
Target: 5'- gCGcGGGCGGACGAggcgugugaccUCgUGACCAGAgCCAc -3' miRNA: 3'- gGC-UCCGCCUGCU-----------AG-ACUGGUCU-GGU- -5' |
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3133 | 3' | -56.7 | NC_001493.1 | + | 3216 | 0.73 | 0.531479 |
Target: 5'- -aGAGGCGGACGAg--GACCcGGACgAg -3' miRNA: 3'- ggCUCCGCCUGCUagaCUGG-UCUGgU- -5' |
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3133 | 3' | -56.7 | NC_001493.1 | + | 118770 | 0.73 | 0.531479 |
Target: 5'- -aGAGGCGGACGAg--GACCcGGACgAg -3' miRNA: 3'- ggCUCCGCCUGCUagaCUGG-UCUGgU- -5' |
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3133 | 3' | -56.7 | NC_001493.1 | + | 19536 | 0.72 | 0.551189 |
Target: 5'- gCGGGGCGGcguCGAUCUua-CAGGCCAu -3' miRNA: 3'- gGCUCCGCCu--GCUAGAcugGUCUGGU- -5' |
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3133 | 3' | -56.7 | NC_001493.1 | + | 124824 | 0.71 | 0.631698 |
Target: 5'- -gGAGGCGGGCGugg-GGCUGGACUAc -3' miRNA: 3'- ggCUCCGCCUGCuagaCUGGUCUGGU- -5' |
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3133 | 3' | -56.7 | NC_001493.1 | + | 9270 | 0.71 | 0.631698 |
Target: 5'- -gGAGGCGGGCGugg-GGCUGGACUAc -3' miRNA: 3'- ggCUCCGCCUGCuagaCUGGUCUGGU- -5' |
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3133 | 3' | -56.7 | NC_001493.1 | + | 28036 | 0.7 | 0.651973 |
Target: 5'- cUCGGuGGUugcgGGugGAUC-GACCGGACCGg -3' miRNA: 3'- -GGCU-CCG----CCugCUAGaCUGGUCUGGU- -5' |
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3133 | 3' | -56.7 | NC_001493.1 | + | 75137 | 0.7 | 0.662091 |
Target: 5'- cUCGAGGgaauCGGGuCGGUgCUGGcCCAGGCCAa -3' miRNA: 3'- -GGCUCC----GCCU-GCUA-GACU-GGUCUGGU- -5' |
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3133 | 3' | -56.7 | NC_001493.1 | + | 45895 | 0.69 | 0.712156 |
Target: 5'- gCGAGGCGGccagaaaaAUGAcCUGACUgacgGGGCCAu -3' miRNA: 3'- gGCUCCGCC--------UGCUaGACUGG----UCUGGU- -5' |
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3133 | 3' | -56.7 | NC_001493.1 | + | 38576 | 0.69 | 0.722004 |
Target: 5'- gCCGAGGCcauggagucGAUGGUCgcGACCAGACa- -3' miRNA: 3'- -GGCUCCGc--------CUGCUAGa-CUGGUCUGgu -5' |
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3133 | 3' | -56.7 | NC_001493.1 | + | 28310 | 0.69 | 0.722004 |
Target: 5'- aCCGAGGCGG-CGAaCacgUGugCGGACaCGa -3' miRNA: 3'- -GGCUCCGCCuGCUaG---ACugGUCUG-GU- -5' |
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3133 | 3' | -56.7 | NC_001493.1 | + | 53025 | 0.68 | 0.769926 |
Target: 5'- aCGcGGCGGACGAcccuuucCUGGCCgAGuCCAu -3' miRNA: 3'- gGCuCCGCCUGCUa------GACUGG-UCuGGU- -5' |
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3133 | 3' | -56.7 | NC_001493.1 | + | 3787 | 0.68 | 0.769926 |
Target: 5'- gCGAGGCGcGGCGGUUucgaggugaUGugCGGGuCCAu -3' miRNA: 3'- gGCUCCGC-CUGCUAG---------ACugGUCU-GGU- -5' |
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3133 | 3' | -56.7 | NC_001493.1 | + | 119341 | 0.68 | 0.769926 |
Target: 5'- gCGAGGCGcGGCGGUUucgaggugaUGugCGGGuCCAu -3' miRNA: 3'- gGCUCCGC-CUGCUAG---------ACugGUCU-GGU- -5' |
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3133 | 3' | -56.7 | NC_001493.1 | + | 23691 | 0.68 | 0.797304 |
Target: 5'- cCCG-GGCGG--GAUCaUGACC-GACCAg -3' miRNA: 3'- -GGCuCCGCCugCUAG-ACUGGuCUGGU- -5' |
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3133 | 3' | -56.7 | NC_001493.1 | + | 54978 | 0.68 | 0.80527 |
Target: 5'- aCGAGGCGcccguugcGACGGUCUcaucaccGACCucacccAGACCGa -3' miRNA: 3'- gGCUCCGC--------CUGCUAGA-------CUGG------UCUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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