Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3133 | 5' | -56 | NC_001493.1 | + | 11199 | 1.09 | 0.002463 |
Target: 5'- cCACGGCCGUCAAAUCCCCGUGCUGAGg -3' miRNA: 3'- -GUGCCGGCAGUUUAGGGGCACGACUC- -5' |
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3133 | 5' | -56 | NC_001493.1 | + | 126753 | 1.09 | 0.002463 |
Target: 5'- cCACGGCCGUCAAAUCCCCGUGCUGAGg -3' miRNA: 3'- -GUGCCGGCAGUUUAGGGGCACGACUC- -5' |
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3133 | 5' | -56 | NC_001493.1 | + | 15713 | 0.71 | 0.639051 |
Target: 5'- gCACGGCCGUgCGAccgcUCCCCGaccuggaacgGCUGAu -3' miRNA: 3'- -GUGCCGGCA-GUUu---AGGGGCa---------CGACUc -5' |
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3133 | 5' | -56 | NC_001493.1 | + | 131267 | 0.71 | 0.639051 |
Target: 5'- gCACGGCCGUgCGAccgcUCCCCGaccuggaacgGCUGAu -3' miRNA: 3'- -GUGCCGGCA-GUUu---AGGGGCa---------CGACUc -5' |
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3133 | 5' | -56 | NC_001493.1 | + | 49768 | 0.7 | 0.684222 |
Target: 5'- -uCGGCCGUgcugacggugguguaCAAcccCCCUGUGCUGGGg -3' miRNA: 3'- guGCCGGCA---------------GUUua-GGGGCACGACUC- -5' |
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3133 | 5' | -56 | NC_001493.1 | + | 42326 | 0.69 | 0.720583 |
Target: 5'- cCACGcGCCGUCcGAUCCCCGa---GAGa -3' miRNA: 3'- -GUGC-CGGCAGuUUAGGGGCacgaCUC- -5' |
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3133 | 5' | -56 | NC_001493.1 | + | 29527 | 0.69 | 0.720583 |
Target: 5'- -cUGGCUGUCGAcacaCCCGUGUUGAu -3' miRNA: 3'- guGCCGGCAGUUuag-GGGCACGACUc -5' |
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3133 | 5' | -56 | NC_001493.1 | + | 31081 | 0.69 | 0.758836 |
Target: 5'- cCGCGGCCGUCAccgggacGGUCCacgCCGUGaccgguggcaUGGGg -3' miRNA: 3'- -GUGCCGGCAGU-------UUAGG---GGCACg---------ACUC- -5' |
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3133 | 5' | -56 | NC_001493.1 | + | 110988 | 0.68 | 0.769336 |
Target: 5'- gCACGacGCCGUCA---CCCCGUGUgaacaGAGa -3' miRNA: 3'- -GUGC--CGGCAGUuuaGGGGCACGa----CUC- -5' |
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3133 | 5' | -56 | NC_001493.1 | + | 3175 | 0.68 | 0.788035 |
Target: 5'- cCGCGGCCGUCccAUCCaCCaucccGUUGAGc -3' miRNA: 3'- -GUGCCGGCAGuuUAGG-GGca---CGACUC- -5' |
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3133 | 5' | -56 | NC_001493.1 | + | 118729 | 0.68 | 0.788035 |
Target: 5'- cCGCGGCCGUCccAUCCaCCaucccGUUGAGc -3' miRNA: 3'- -GUGCCGGCAGuuUAGG-GGca---CGACUC- -5' |
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3133 | 5' | -56 | NC_001493.1 | + | 25479 | 0.68 | 0.797176 |
Target: 5'- uCACGGCCGUCGuacucaacacGGUCUCCGg---GGGg -3' miRNA: 3'- -GUGCCGGCAGU----------UUAGGGGCacgaCUC- -5' |
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3133 | 5' | -56 | NC_001493.1 | + | 58011 | 0.68 | 0.806165 |
Target: 5'- gGCGGuacCCGUCAAAUCCCgG-GCauugucggUGAGg -3' miRNA: 3'- gUGCC---GGCAGUUUAGGGgCaCG--------ACUC- -5' |
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3133 | 5' | -56 | NC_001493.1 | + | 100777 | 0.67 | 0.84044 |
Target: 5'- cCACGGCCGUU--AUCCCCc--CUGGa -3' miRNA: 3'- -GUGCCGGCAGuuUAGGGGcacGACUc -5' |
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3133 | 5' | -56 | NC_001493.1 | + | 130413 | 0.67 | 0.848547 |
Target: 5'- uCACGGCCGUCAucAUCaCCguggGUGCUcucgucGAGa -3' miRNA: 3'- -GUGCCGGCAGUu-UAG-GGg---CACGA------CUC- -5' |
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3133 | 5' | -56 | NC_001493.1 | + | 14859 | 0.67 | 0.848547 |
Target: 5'- uCACGGCCGUCAucAUCaCCguggGUGCUcucgucGAGa -3' miRNA: 3'- -GUGCCGGCAGUu-UAG-GGg---CACGA------CUC- -5' |
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3133 | 5' | -56 | NC_001493.1 | + | 97240 | 0.67 | 0.856456 |
Target: 5'- aACGGCCGggCAGA-CCCCGagGUgGAGc -3' miRNA: 3'- gUGCCGGCa-GUUUaGGGGCa-CGaCUC- -5' |
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3133 | 5' | -56 | NC_001493.1 | + | 55889 | 0.66 | 0.892795 |
Target: 5'- -uCGGCuCGgagCAGuacuUCCCCGUGCauucGAGg -3' miRNA: 3'- guGCCG-GCa--GUUu---AGGGGCACGa---CUC- -5' |
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3133 | 5' | -56 | NC_001493.1 | + | 95534 | 0.66 | 0.892795 |
Target: 5'- cCACGGCuCGcCcGGUCCCCGUGa---- -3' miRNA: 3'- -GUGCCG-GCaGuUUAGGGGCACgacuc -5' |
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3133 | 5' | -56 | NC_001493.1 | + | 94729 | 0.66 | 0.899386 |
Target: 5'- gAUGGCCGUgucCGAcgCCCCGaUGCg--- -3' miRNA: 3'- gUGCCGGCA---GUUuaGGGGC-ACGacuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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