miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31331 3' -51.1 NC_006623.1 + 148051 0.66 0.99139
Target:  5'- gCCGgCCUCCAGGgcauUGcCgUUGAGAa -3'
miRNA:   3'- -GGCgGGAGGUCUacu-ACuGaAACUCU- -5'
31331 3' -51.1 NC_006623.1 + 113561 0.66 0.99139
Target:  5'- gCCGgCCUCCAGGgcauUGcCgUUGAGAa -3'
miRNA:   3'- -GGCgGGAGGUCUacu-ACuGaAACUCU- -5'
31331 3' -51.1 NC_006623.1 + 86289 0.66 0.99015
Target:  5'- gCUGCUCUCCAcacGGUGAUGGgguUUUUGAa- -3'
miRNA:   3'- -GGCGGGAGGU---CUACUACU---GAAACUcu -5'
31331 3' -51.1 NC_006623.1 + 109502 0.67 0.979541
Target:  5'- -aGCCUUCCGGuAUGGUGuCUUcGAGu -3'
miRNA:   3'- ggCGGGAGGUC-UACUACuGAAaCUCu -5'
31331 3' -51.1 NC_006623.1 + 145042 1.12 0.00574
Target:  5'- aCCGCCCUCCAGAUGAUGACUUUGAGAc -3'
miRNA:   3'- -GGCGGGAGGUCUACUACUGAAACUCU- -5'
31331 3' -51.1 NC_006623.1 + 116570 1.12 0.00574
Target:  5'- aCCGCCCUCCAGAUGAUGACUUUGAGAc -3'
miRNA:   3'- -GGCGGGAGGUCUACUACUGAAACUCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.