miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31331 5' -42.2 NC_006623.1 + 123061 0.66 1
Target:  5'- gGGUgaGggGGGAGAGUgGaCgGAGGAc -3'
miRNA:   3'- -CCAgaCuuUUCUUUCAgUaGaCUUCU- -5'
31331 5' -42.2 NC_006623.1 + 51222 0.68 1
Target:  5'- -uUCUGAGAAGGGAGauagUAUCUuccGGAGAu -3'
miRNA:   3'- ccAGACUUUUCUUUCa---GUAGA---CUUCU- -5'
31331 5' -42.2 NC_006623.1 + 138551 0.66 1
Target:  5'- gGGUgaGggGGGAGAGUgGaCgGAGGAc -3'
miRNA:   3'- -CCAgaCuuUUCUUUCAgUaGaCUUCU- -5'
31331 5' -42.2 NC_006623.1 + 34692 0.66 1
Target:  5'- cGUCaGAucacuGGAGGAAGUC-UUUGAAGGg -3'
miRNA:   3'- cCAGaCU-----UUUCUUUCAGuAGACUUCU- -5'
31331 5' -42.2 NC_006623.1 + 78300 0.66 1
Target:  5'- ----cGAGuuGGGGAAGUCucUCUGAGGAa -3'
miRNA:   3'- ccagaCUU--UUCUUUCAGu-AGACUUCU- -5'
31331 5' -42.2 NC_006623.1 + 131285 0.68 1
Target:  5'- aGUCUGAGua-AAAGUCAUCUGu--- -3'
miRNA:   3'- cCAGACUUuucUUUCAGUAGACuucu -5'
31331 5' -42.2 NC_006623.1 + 12896 0.67 1
Target:  5'- uGUUUGAAAGGAGuaaCAUCUGgcGGu -3'
miRNA:   3'- cCAGACUUUUCUUucaGUAGACuuCU- -5'
31331 5' -42.2 NC_006623.1 + 12950 0.67 1
Target:  5'- uGUCUGAAuuu--GGUCcAUUUGAAGAc -3'
miRNA:   3'- cCAGACUUuucuuUCAG-UAGACUUCU- -5'
31331 5' -42.2 NC_006623.1 + 11824 0.67 1
Target:  5'- cGGUCUc---GGAAAGUgCAUuaCUGAAGAg -3'
miRNA:   3'- -CCAGAcuuuUCUUUCA-GUA--GACUUCU- -5'
31331 5' -42.2 NC_006623.1 + 145076 1.15 0.034971
Target:  5'- aGGUCUGAAAAGAAAGUCAUCUGAAGAu -3'
miRNA:   3'- -CCAGACUUUUCUUUCAGUAGACUUCU- -5'
31331 5' -42.2 NC_006623.1 + 116536 1.15 0.034971
Target:  5'- aGGUCUGAAAAGAAAGUCAUCUGAAGAu -3'
miRNA:   3'- -CCAGACUUUUCUUUCAGUAGACUUCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.