miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31332 3' -63.1 NC_006623.1 + 120887 0.66 0.662463
Target:  5'- cCCGGGUCGuGUguaucgugaggacaaGCCuCUCCgaucggUGACCCa -3'
miRNA:   3'- -GGCCCAGCuCG---------------UGG-GGGGa-----GCUGGGg -5'
31332 3' -63.1 NC_006623.1 + 140724 0.66 0.65578
Target:  5'- cCCGGGUCGuGUguaucgugagacaaGCCuCUCCgaucggUGACCCa -3'
miRNA:   3'- -GGCCCAGCuCG--------------UGG-GGGGa-----GCUGGGg -5'
31332 3' -63.1 NC_006623.1 + 25137 0.66 0.649089
Target:  5'- aCGGGUCGcaagaaacaGGUACaauCCCCUUu-CCCCu -3'
miRNA:   3'- gGCCCAGC---------UCGUGg--GGGGAGcuGGGG- -5'
31332 3' -63.1 NC_006623.1 + 123757 0.66 0.620377
Target:  5'- gCGGGUCGuGCGCCgugauaUCUUCGGCgaCCu -3'
miRNA:   3'- gGCCCAGCuCGUGGg-----GGGAGCUGg-GG- -5'
31332 3' -63.1 NC_006623.1 + 137854 0.66 0.620377
Target:  5'- gCGGGUCGuGCGCCgugauaUCUUCGGCgaCCu -3'
miRNA:   3'- gGCCCAGCuCGUGGg-----GGGAGCUGg-GG- -5'
31332 3' -63.1 NC_006623.1 + 1132 0.67 0.563322
Target:  5'- gCCGGGUUGGcauGUACCUCCg-CGGuCCCUg -3'
miRNA:   3'- -GGCCCAGCU---CGUGGGGGgaGCU-GGGG- -5'
31332 3' -63.1 NC_006623.1 + 124630 0.67 0.563322
Target:  5'- uCCaGG-CGGGuCGCCCCCCUC-ACCgaaCCg -3'
miRNA:   3'- -GGcCCaGCUC-GUGGGGGGAGcUGG---GG- -5'
31332 3' -63.1 NC_006623.1 + 145994 0.68 0.526048
Target:  5'- cCCGGGgaCGAGgAUUCCCgCUCGGgUCCg -3'
miRNA:   3'- -GGCCCa-GCUCgUGGGGG-GAGCUgGGG- -5'
31332 3' -63.1 NC_006623.1 + 115618 0.68 0.526048
Target:  5'- cCCGGGgaCGAGgAUUCCCgCUCGGgUCCg -3'
miRNA:   3'- -GGCCCa-GCUCgUGGGGG-GAGCUgGGG- -5'
31332 3' -63.1 NC_006623.1 + 139028 0.69 0.478192
Target:  5'- gCGGucaccguccagagaGUCGAGCcagaaAUCgCCCUCGAUCCCu -3'
miRNA:   3'- gGCC--------------CAGCUCG-----UGGgGGGAGCUGGGG- -5'
31332 3' -63.1 NC_006623.1 + 122584 0.69 0.478192
Target:  5'- gCGGucaccguccagagaGUCGAGCcagaaAUCgCCCUCGAUCCCu -3'
miRNA:   3'- gGCC--------------CAGCUCG-----UGGgGGGAGCUGGGG- -5'
31332 3' -63.1 NC_006623.1 + 131137 0.72 0.336597
Target:  5'- uCCGGGUgcagaaacCGAgGCACCUgCCCa-GACCCCg -3'
miRNA:   3'- -GGCCCA--------GCU-CGUGGG-GGGagCUGGGG- -5'
31332 3' -63.1 NC_006623.1 + 121523 0.72 0.315833
Target:  5'- uCCGGGUCGcuccAGCuCCUCCCgCGugCCg -3'
miRNA:   3'- -GGCCCAGC----UCGuGGGGGGaGCugGGg -5'
31332 3' -63.1 NC_006623.1 + 140089 0.72 0.315833
Target:  5'- uCCGGGUCGcuccAGCuCCUCCCgCGugCCg -3'
miRNA:   3'- -GGCCCAGC----UCGuGGGGGGaGCugGGg -5'
31332 3' -63.1 NC_006623.1 + 45844 0.73 0.283406
Target:  5'- gCCGGGcUCcGGCGCaCCCCCaUCGACUaCCu -3'
miRNA:   3'- -GGCCC-AGcUCGUG-GGGGG-AGCUGG-GG- -5'
31332 3' -63.1 NC_006623.1 + 140572 1.11 0.000613
Target:  5'- cCCGGGUCGAGCACCCCCCUCGACCCCc -3'
miRNA:   3'- -GGCCCAGCUCGUGGGGGGAGCUGGGG- -5'
31332 3' -63.1 NC_006623.1 + 121040 1.11 0.000613
Target:  5'- cCCGGGUCGAGCACCCCCCUCGACCCCc -3'
miRNA:   3'- -GGCCCAGCUCGUGGGGGGAGCUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.