miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31333 5' -60.1 NC_006623.1 + 111458 0.66 0.755029
Target:  5'- gUCUCacauUUGCCCAuGUCCACUCaggcaCCCa -3'
miRNA:   3'- aGGAGg---AGCGGGUuCAGGUGAG-----GGGc -5'
31333 5' -60.1 NC_006623.1 + 107261 0.66 0.736237
Target:  5'- cCUUCCUgGCCCAAGauUCUAgaCaCCCGu -3'
miRNA:   3'- aGGAGGAgCGGGUUC--AGGUgaG-GGGC- -5'
31333 5' -60.1 NC_006623.1 + 94698 0.66 0.736237
Target:  5'- gCUUUCUcCGCCCuuAGUCCGCaagcaggguuUCCCUGu -3'
miRNA:   3'- aGGAGGA-GCGGGu-UCAGGUG----------AGGGGC- -5'
31333 5' -60.1 NC_006623.1 + 123640 0.67 0.707431
Target:  5'- aUCUgCUUGCCCcAGaccuugcuuUCCaACUCCCCGu -3'
miRNA:   3'- aGGAgGAGCGGGuUC---------AGG-UGAGGGGC- -5'
31333 5' -60.1 NC_006623.1 + 137972 0.67 0.707431
Target:  5'- aUCUgCUUGCCCcAGaccuugcuuUCCaACUCCCCGu -3'
miRNA:   3'- aGGAgGAGCGGGuUC---------AGG-UGAGGGGC- -5'
31333 5' -60.1 NC_006623.1 + 51685 0.67 0.658329
Target:  5'- cUCCUCCUCGCCCua--CCGCUUUa-- -3'
miRNA:   3'- -AGGAGGAGCGGGuucaGGUGAGGggc -5'
31333 5' -60.1 NC_006623.1 + 145210 0.68 0.627574
Target:  5'- cCCUCCUuccgccaUGCCCcauaacucccgaGGGUCCACcauguccgCCCCGa -3'
miRNA:   3'- aGGAGGA-------GCGGG------------UUCAGGUGa-------GGGGC- -5'
31333 5' -60.1 NC_006623.1 + 116402 0.68 0.627574
Target:  5'- cCCUCCUuccgccaUGCCCcauaacucccgaGGGUCCACcauguccgCCCCGa -3'
miRNA:   3'- aGGAGGA-------GCGGG------------UUCAGGUGa-------GGGGC- -5'
31333 5' -60.1 NC_006623.1 + 108844 0.68 0.626581
Target:  5'- cUCC-CCUCGCCaucuagaCGCUCCCCu -3'
miRNA:   3'- -AGGaGGAGCGGguucag-GUGAGGGGc -5'
31333 5' -60.1 NC_006623.1 + 1011 0.7 0.511491
Target:  5'- cCCUCCUCGCCgAGcGgcugCCACaUUCCCu -3'
miRNA:   3'- aGGAGGAGCGGgUU-Ca---GGUG-AGGGGc -5'
31333 5' -60.1 NC_006623.1 + 111498 0.72 0.412796
Target:  5'- aUCCacaUCaCUCGCCCAAGuuUCC-CUUCCCGc -3'
miRNA:   3'- -AGG---AG-GAGCGGGUUC--AGGuGAGGGGC- -5'
31333 5' -60.1 NC_006623.1 + 7793 0.77 0.20106
Target:  5'- aUCCUCCUC-CCUAuAGUCCGC-CCCCa -3'
miRNA:   3'- -AGGAGGAGcGGGU-UCAGGUGaGGGGc -5'
31333 5' -60.1 NC_006623.1 + 140037 1.09 0.001194
Target:  5'- gUCCUCCUCGCCCAAGUCCACUCCCCGg -3'
miRNA:   3'- -AGGAGGAGCGGGUUCAGGUGAGGGGC- -5'
31333 5' -60.1 NC_006623.1 + 121575 1.09 0.001194
Target:  5'- gUCCUCCUCGCCCAAGUCCACUCCCCGg -3'
miRNA:   3'- -AGGAGGAGCGGGUUCAGGUGAGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.