miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31334 5' -55.6 NC_006623.1 + 133814 0.66 0.940711
Target:  5'- uGCCGCGAcgcuCGCACccuucGGCGCGauGGGa -3'
miRNA:   3'- gUGGCGUUauu-GCGUGc----CUGCGC--CCC- -5'
31334 5' -55.6 NC_006623.1 + 70419 0.66 0.935972
Target:  5'- uGCCGCGAUuGCGUuucuuaGGAgGCGGa- -3'
miRNA:   3'- gUGGCGUUAuUGCGug----CCUgCGCCcc -5'
31334 5' -55.6 NC_006623.1 + 115687 0.66 0.933016
Target:  5'- gGCCGCGuaGGCGUACGcGCGUucuaaaaauucgcccGGGGc -3'
miRNA:   3'- gUGGCGUuaUUGCGUGCcUGCG---------------CCCC- -5'
31334 5' -55.6 NC_006623.1 + 145925 0.66 0.933016
Target:  5'- gGCCGCGuaGGCGUACGcGCGUucuaaaaauucgcccGGGGc -3'
miRNA:   3'- gUGGCGUuaUUGCGUGCcUGCG---------------CCCC- -5'
31334 5' -55.6 NC_006623.1 + 1177 0.66 0.930999
Target:  5'- aGCCGCucggcgaggagGGUGGggUGUGCGGcacagagcaaaGCGCGGGGg -3'
miRNA:   3'- gUGGCG-----------UUAUU--GCGUGCC-----------UGCGCCCC- -5'
31334 5' -55.6 NC_006623.1 + 133599 0.66 0.914668
Target:  5'- uCGCgGCGuucGUAGCcuGCGCGGucgcgcuCGUGGGGc -3'
miRNA:   3'- -GUGgCGU---UAUUG--CGUGCCu------GCGCCCC- -5'
31334 5' -55.6 NC_006623.1 + 46396 0.67 0.902612
Target:  5'- aGCCGU---GGCGCGCGGA-GCGGc- -3'
miRNA:   3'- gUGGCGuuaUUGCGUGCCUgCGCCcc -5'
31334 5' -55.6 NC_006623.1 + 54668 0.67 0.894937
Target:  5'- gGCCGCAuugacucuguccUGugGUugGGGCGUGGa- -3'
miRNA:   3'- gUGGCGUu-----------AUugCGugCCUGCGCCcc -5'
31334 5' -55.6 NC_006623.1 + 123023 0.68 0.861054
Target:  5'- -cCCGCGAgguUGuCAgGGACGCGGaGGu -3'
miRNA:   3'- guGGCGUUauuGC-GUgCCUGCGCC-CC- -5'
31334 5' -55.6 NC_006623.1 + 137890 0.68 0.861054
Target:  5'- cCGCUGCGAcGGCGCGCuuaGcCGCGGGc -3'
miRNA:   3'- -GUGGCGUUaUUGCGUGc--CuGCGCCCc -5'
31334 5' -55.6 NC_006623.1 + 138589 0.68 0.861054
Target:  5'- -cCCGCGAgguUGuCAgGGACGCGGaGGu -3'
miRNA:   3'- guGGCGUUauuGC-GUgCCUGCGCC-CC- -5'
31334 5' -55.6 NC_006623.1 + 123722 0.68 0.861054
Target:  5'- cCGCUGCGAcGGCGCGCuuaGcCGCGGGc -3'
miRNA:   3'- -GUGGCGUUaUUGCGUGc--CuGCGCCCc -5'
31334 5' -55.6 NC_006623.1 + 145652 0.68 0.859536
Target:  5'- aGCCGCuccaaagcagGACGCGCGcGAUggGCGGGc -3'
miRNA:   3'- gUGGCGuua-------UUGCGUGC-CUG--CGCCCc -5'
31334 5' -55.6 NC_006623.1 + 115960 0.68 0.859536
Target:  5'- aGCCGCuccaaagcagGACGCGCGcGAUggGCGGGc -3'
miRNA:   3'- gUGGCGuua-------UUGCGUGC-CUG--CGCCCc -5'
31334 5' -55.6 NC_006623.1 + 122712 0.68 0.853386
Target:  5'- gGCCGCcuu-GCGCGCcGGCGCGGc- -3'
miRNA:   3'- gUGGCGuuauUGCGUGcCUGCGCCcc -5'
31334 5' -55.6 NC_006623.1 + 138900 0.68 0.853386
Target:  5'- gGCCGCcuu-GCGCGCcGGCGCGGc- -3'
miRNA:   3'- gUGGCGuuauUGCGUGcCUGCGCCcc -5'
31334 5' -55.6 NC_006623.1 + 25726 0.69 0.812225
Target:  5'- -uCUGCAAcgGACucuagaaGCGGugGCGGGGg -3'
miRNA:   3'- guGGCGUUa-UUGcg-----UGCCugCGCCCC- -5'
31334 5' -55.6 NC_006623.1 + 146189 0.7 0.776361
Target:  5'- cCGCC-CGGUAgguAUGCGCGGACccgaGCGGGa -3'
miRNA:   3'- -GUGGcGUUAU---UGCGUGCCUG----CGCCCc -5'
31334 5' -55.6 NC_006623.1 + 115423 0.7 0.776361
Target:  5'- cCGCC-CGGUAgguAUGCGCGGACccgaGCGGGa -3'
miRNA:   3'- -GUGGcGUUAU---UGCGUGCCUG----CGCCCc -5'
31334 5' -55.6 NC_006623.1 + 110094 0.7 0.776361
Target:  5'- aUACCGUuacGUcGCGCAUGuGuauccGCGCGGGGg -3'
miRNA:   3'- -GUGGCGu--UAuUGCGUGC-C-----UGCGCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.