miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31335 5' -52.2 NC_006623.1 + 55150 0.68 0.938711
Target:  5'- aCCGC--GCGCAGUGAUauuuaUGcAUCGCUGu -3'
miRNA:   3'- -GGCGcaCGCGUCAUUAc----AC-UAGCGAC- -5'
31335 5' -52.2 NC_006623.1 + 21937 0.69 0.911179
Target:  5'- aUCGCGUGCGUAGgua--UGGUCGUg- -3'
miRNA:   3'- -GGCGCACGCGUCauuacACUAGCGac -5'
31335 5' -52.2 NC_006623.1 + 139413 1.11 0.005104
Target:  5'- aCCGCGUGCGCAGUAAUGUGAUCGCUGu -3'
miRNA:   3'- -GGCGCACGCGUCAUUACACUAGCGAC- -5'
31335 5' -52.2 NC_006623.1 + 122199 1.11 0.005104
Target:  5'- aCCGCGUGCGCAGUAAUGUGAUCGCUGu -3'
miRNA:   3'- -GGCGCACGCGUCAUUACACUAGCGAC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.