Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 31336 | 3' | -57.4 | NC_006623.1 | + | 121867 | 0.74 | 0.438365 |
|
Target: 5'- gCUCGucgaGGCCUcGGCCuuGCGUCGCCg -3' miRNA: 3'- gGAGU----UUGGAuCCGGcgCGCAGCGGg -5' |
|||||||
| 31336 | 3' | -57.4 | NC_006623.1 | + | 139744 | 0.74 | 0.438365 |
|
Target: 5'- gCUCGucgaGGCCUcGGCCuuGCGUCGCCg -3' miRNA: 3'- gGAGU----UUGGAuCCGGcgCGCAGCGGg -5' |
|||||||
| 31336 | 3' | -57.4 | NC_006623.1 | + | 145852 | 0.75 | 0.38727 |
|
Target: 5'- cCCUCccgacgagaaAGACCcGGGCCGCaGCGUgGCCa -3' miRNA: 3'- -GGAG----------UUUGGaUCCGGCG-CGCAgCGGg -5' |
|||||||
| 31336 | 3' | -57.4 | NC_006623.1 | + | 115759 | 0.75 | 0.379143 |
|
Target: 5'- cCCUCcgacgagaaAGACCcGGGCCGCaGCGUgGCCa -3' miRNA: 3'- -GGAG---------UUUGGaUCCGGCG-CGCAgCGGg -5' |
|||||||
| 31336 | 3' | -57.4 | NC_006623.1 | + | 139162 | 1.14 | 0.00115 |
|
Target: 5'- gCCUCAAACCUAGGCCGCGCGUCGCCCg -3' miRNA: 3'- -GGAGUUUGGAUCCGGCGCGCAGCGGG- -5' |
|||||||
| 31336 | 3' | -57.4 | NC_006623.1 | + | 122450 | 1.14 | 0.00115 |
|
Target: 5'- gCCUCAAACCUAGGCCGCGCGUCGCCCg -3' miRNA: 3'- -GGAGUUUGGAUCCGGCGCGCAGCGGG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home