miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31336 5' -49.2 NC_006623.1 + 115681 0.66 0.999209
Target:  5'- gCAG-AGGGCCGcguaGGCGUAcGCgCGUUCu -3'
miRNA:   3'- gGUCuUUUCGGC----UUGCAU-CG-GCAAGc -5'
31336 5' -49.2 NC_006623.1 + 145931 0.66 0.999209
Target:  5'- gCAG-AGGGCCGcguaGGCGUAcGCgCGUUCu -3'
miRNA:   3'- gGUCuUUUCGGC----UUGCAU-CG-GCAAGc -5'
31336 5' -49.2 NC_006623.1 + 128206 0.66 0.998278
Target:  5'- aCGGuuuAAGCCGGugauagACG-AGCCgGUUCGg -3'
miRNA:   3'- gGUCuu-UUCGGCU------UGCaUCGG-CAAGC- -5'
31336 5' -49.2 NC_006623.1 + 110528 0.66 0.998278
Target:  5'- gCGGGAGGGCCGAGagccCGcAGCCGc--- -3'
miRNA:   3'- gGUCUUUUCGGCUU----GCaUCGGCaagc -5'
31336 5' -49.2 NC_006623.1 + 115784 0.67 0.997937
Target:  5'- uCCAGGAAAGCCGcuccucuaaGACGcAGCgucccccucUGUUCa -3'
miRNA:   3'- -GGUCUUUUCGGC---------UUGCaUCG---------GCAAGc -5'
31336 5' -49.2 NC_006623.1 + 145827 0.67 0.997937
Target:  5'- uCCAGGAAAGCCGcuccucuaaGACGcAGCgucccccucUGUUCa -3'
miRNA:   3'- -GGUCUUUUCGGC---------UUGCaUCG---------GCAAGc -5'
31336 5' -49.2 NC_006623.1 + 7812 0.67 0.99754
Target:  5'- uCCGGAGAAGuuGGGcCGUGGUCa---- -3'
miRNA:   3'- -GGUCUUUUCggCUU-GCAUCGGcaagc -5'
31336 5' -49.2 NC_006623.1 + 111706 0.67 0.997082
Target:  5'- aCUGGAGAuAGaaGAACGUaagAGCCGggCGg -3'
miRNA:   3'- -GGUCUUU-UCggCUUGCA---UCGGCaaGC- -5'
31336 5' -49.2 NC_006623.1 + 145860 0.69 0.983916
Target:  5'- aCgAGAAAgacccgGGCCGcAGCGUGGCCaUUCu -3'
miRNA:   3'- -GgUCUUU------UCGGC-UUGCAUCGGcAAGc -5'
31336 5' -49.2 NC_006623.1 + 115752 0.69 0.983916
Target:  5'- aCgAGAAAgacccgGGCCGcAGCGUGGCCaUUCu -3'
miRNA:   3'- -GgUCUUU------UCGGC-UUGCAUCGGcAAGc -5'
31336 5' -49.2 NC_006623.1 + 29000 0.71 0.965788
Target:  5'- gCCAGGAcAAGCC-AGCGUggaagguucAGCCGUUUa -3'
miRNA:   3'- -GGUCUU-UUCGGcUUGCA---------UCGGCAAGc -5'
31336 5' -49.2 NC_006623.1 + 53065 0.72 0.931436
Target:  5'- gUCAGAAucGCCGGGuCGUAGCCa---- -3'
miRNA:   3'- -GGUCUUuuCGGCUU-GCAUCGGcaagc -5'
31336 5' -49.2 NC_006623.1 + 125489 0.73 0.920327
Target:  5'- gCGGGAcaGGGCCG-GCGUAGUCGcUCGa -3'
miRNA:   3'- gGUCUU--UUCGGCuUGCAUCGGCaAGC- -5'
31336 5' -49.2 NC_006623.1 + 23446 0.76 0.787682
Target:  5'- -aGGAcuGGCCGAGCGUcGCUGUUCc -3'
miRNA:   3'- ggUCUuuUCGGCUUGCAuCGGCAAGc -5'
31336 5' -49.2 NC_006623.1 + 136580 0.78 0.728424
Target:  5'- aCCAGAGGGGCCGAagACGcGGCCG--CGg -3'
miRNA:   3'- -GGUCUUUUCGGCU--UGCaUCGGCaaGC- -5'
31336 5' -49.2 NC_006623.1 + 139197 1.12 0.010219
Target:  5'- cCCAGAAAAGCCGAACGUAGCCGUUCGu -3'
miRNA:   3'- -GGUCUUUUCGGCUUGCAUCGGCAAGC- -5'
31336 5' -49.2 NC_006623.1 + 122415 1.12 0.010219
Target:  5'- cCCAGAAAAGCCGAACGUAGCCGUUCGu -3'
miRNA:   3'- -GGUCUUUUCGGCUUGCAUCGGCAAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.