miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31337 3' -51.4 NC_006623.1 + 128938 0.66 0.986518
Target:  5'- cGggGuGGAaCUUGGUAGUuacGUGUCuGGCa -3'
miRNA:   3'- -CuuU-CCUgGAGCCGUCAu--UACAG-CCG- -5'
31337 3' -51.4 NC_006623.1 + 129852 0.67 0.972756
Target:  5'- cGGAGGcACCuuccaaacUCGGCAGaaucugccgGUCGGCa -3'
miRNA:   3'- cUUUCC-UGG--------AGCCGUCauua-----CAGCCG- -5'
31337 3' -51.4 NC_006623.1 + 139574 0.68 0.970429
Target:  5'- aGggGGGGgggCGGCGG-GAUGUcCGGCg -3'
miRNA:   3'- -CuuUCCUggaGCCGUCaUUACA-GCCG- -5'
31337 3' -51.4 NC_006623.1 + 122038 0.68 0.970429
Target:  5'- aGggGGGGgggCGGCGG-GAUGUcCGGCg -3'
miRNA:   3'- -CuuUCCUggaGCCGUCaUUACA-GCCG- -5'
31337 3' -51.4 NC_006623.1 + 90334 0.68 0.969521
Target:  5'- uGAcGGGACUUggugcauguggugaUGGCAGUAGcGUCGGa -3'
miRNA:   3'- -CUuUCCUGGA--------------GCCGUCAUUaCAGCCg -5'
31337 3' -51.4 NC_006623.1 + 24029 0.68 0.960437
Target:  5'- -cAAGGACUauggUgGGCGGaUGAUGgCGGCa -3'
miRNA:   3'- cuUUCCUGG----AgCCGUC-AUUACaGCCG- -5'
31337 3' -51.4 NC_006623.1 + 25333 0.69 0.933983
Target:  5'- aGGGGGACUUaCGGCAGcccgGUgGGCu -3'
miRNA:   3'- cUUUCCUGGA-GCCGUCauuaCAgCCG- -5'
31337 3' -51.4 NC_006623.1 + 138903 0.69 0.933983
Target:  5'- cGGGAGGucucuCgCUCGGCGGacgcgagGUCGGCc -3'
miRNA:   3'- -CUUUCCu----G-GAGCCGUCauua---CAGCCG- -5'
31337 3' -51.4 NC_006623.1 + 122709 0.69 0.933983
Target:  5'- cGGGAGGucucuCgCUCGGCGGacgcgagGUCGGCc -3'
miRNA:   3'- -CUUUCCu----G-GAGCCGUCauua---CAGCCG- -5'
31337 3' -51.4 NC_006623.1 + 20131 0.7 0.911294
Target:  5'- cGGGGGGCUUCGGCGGccuUGaggCGGUg -3'
miRNA:   3'- cUUUCCUGGAGCCGUCauuACa--GCCG- -5'
31337 3' -51.4 NC_006623.1 + 126984 1.13 0.004073
Target:  5'- aGAAAGGACCUCGGCAGUAAUGUCGGCa -3'
miRNA:   3'- -CUUUCCUGGAGCCGUCAUUACAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.