miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31337 5' -48.7 NC_006623.1 + 134337 0.66 0.999388
Target:  5'- cCUACCGUCCaACUUGagGCCua--UCUc -3'
miRNA:   3'- -GAUGGCAGG-UGAAUggCGGuuuaAGG- -5'
31337 5' -48.7 NC_006623.1 + 56219 0.66 0.999388
Target:  5'- -cGCUGUCCuCUacUACUGCCAAGa--- -3'
miRNA:   3'- gaUGGCAGGuGA--AUGGCGGUUUaagg -5'
31337 5' -48.7 NC_006623.1 + 961 0.66 0.999243
Target:  5'- -aGCCGaggauuugggCCGCUcACCGCCAGAg--- -3'
miRNA:   3'- gaUGGCa---------GGUGAaUGGCGGUUUaagg -5'
31337 5' -48.7 NC_006623.1 + 115340 0.66 0.99907
Target:  5'- -aACCGUUCG---GCCGCCGGA--CCg -3'
miRNA:   3'- gaUGGCAGGUgaaUGGCGGUUUaaGG- -5'
31337 5' -48.7 NC_006623.1 + 146272 0.66 0.99907
Target:  5'- -aACCGUUCG---GCCGCCGGA--CCg -3'
miRNA:   3'- gaUGGCAGGUgaaUGGCGGUUUaaGG- -5'
31337 5' -48.7 NC_006623.1 + 85128 0.67 0.998333
Target:  5'- gUACgCGgccCUGCUUACCGCUAAaaGUUCg -3'
miRNA:   3'- gAUG-GCa--GGUGAAUGGCGGUU--UAAGg -5'
31337 5' -48.7 NC_006623.1 + 122724 0.67 0.997997
Target:  5'- -cGCCGgcgCgGC-UGCCGCCAAcucUCCc -3'
miRNA:   3'- gaUGGCa--GgUGaAUGGCGGUUua-AGG- -5'
31337 5' -48.7 NC_006623.1 + 138888 0.67 0.997997
Target:  5'- -cGCCGgcgCgGC-UGCCGCCAAcucUCCc -3'
miRNA:   3'- gaUGGCa--GgUGaAUGGCGGUUua-AGG- -5'
31337 5' -48.7 NC_006623.1 + 130456 0.67 0.997055
Target:  5'- aUACCGUUaugCGCgagggggagggGCCGCCGGuugUCCa -3'
miRNA:   3'- gAUGGCAG---GUGaa---------UGGCGGUUua-AGG- -5'
31337 5' -48.7 NC_006623.1 + 130608 0.67 0.996632
Target:  5'- -gGCCGUaaaCGCgaggacGCUGCCGGAgUCCg -3'
miRNA:   3'- gaUGGCAg--GUGaa----UGGCGGUUUaAGG- -5'
31337 5' -48.7 NC_006623.1 + 80652 0.67 0.996632
Target:  5'- aUACCGUCUAauaacGCaGaCCAAGUUCCa -3'
miRNA:   3'- gAUGGCAGGUgaa--UGgC-GGUUUAAGG- -5'
31337 5' -48.7 NC_006623.1 + 35223 0.68 0.996035
Target:  5'- -aACCGUU--UUUACCGCCAAgauGUUCa -3'
miRNA:   3'- gaUGGCAGguGAAUGGCGGUU---UAAGg -5'
31337 5' -48.7 NC_006623.1 + 129479 0.68 0.996035
Target:  5'- gUACuCGUCCAgCggACCGgCGcAUUCCu -3'
miRNA:   3'- gAUG-GCAGGU-GaaUGGCgGUuUAAGG- -5'
31337 5' -48.7 NC_006623.1 + 116611 0.69 0.98901
Target:  5'- --gUCGUCCGCcgGCCGCCucg-UCUu -3'
miRNA:   3'- gauGGCAGGUGaaUGGCGGuuuaAGG- -5'
31337 5' -48.7 NC_006623.1 + 145001 0.69 0.98901
Target:  5'- --gUCGUCCGCcgGCCGCCucg-UCUu -3'
miRNA:   3'- gauGGCAGGUGaaUGGCGGuuuaAGG- -5'
31337 5' -48.7 NC_006623.1 + 126807 0.7 0.985816
Target:  5'- cCUGCCGaCa--UUACUGCCGAggUCCu -3'
miRNA:   3'- -GAUGGCaGgugAAUGGCGGUUuaAGG- -5'
31337 5' -48.7 NC_006623.1 + 1587 0.7 0.977357
Target:  5'- gUACUGcCCGCUc-CCGCCGGAgaCCg -3'
miRNA:   3'- gAUGGCaGGUGAauGGCGGUUUaaGG- -5'
31337 5' -48.7 NC_006623.1 + 65605 0.72 0.958453
Target:  5'- ---aCGUCCGC-UACUGCCGGAggcgCCa -3'
miRNA:   3'- gaugGCAGGUGaAUGGCGGUUUaa--GG- -5'
31337 5' -48.7 NC_006623.1 + 129900 0.76 0.830884
Target:  5'- -gACCGgcgauUCCGCgagcACCGCCAGGUUCUc -3'
miRNA:   3'- gaUGGC-----AGGUGaa--UGGCGGUUUAAGG- -5'
31337 5' -48.7 NC_006623.1 + 126950 1.13 0.008853
Target:  5'- uCUACCGUCCACUUACCGCCAAAUUCCu -3'
miRNA:   3'- -GAUGGCAGGUGAAUGGCGGUUUAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.