miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31339 5' -56.4 NC_006623.1 + 139716 0.67 0.870881
Target:  5'- gCCCGGc-GCaACCguagccgUCC-AACUCGGCc -3'
miRNA:   3'- aGGGCCucCG-UGGa------AGGuUUGAGCCG- -5'
31339 5' -56.4 NC_006623.1 + 138546 0.69 0.760338
Target:  5'- uUCCCGGGcGGCcCCgUUCCAccgUUCGGUu -3'
miRNA:   3'- -AGGGCCU-CCGuGG-AAGGUuu-GAGCCG- -5'
31339 5' -56.4 NC_006623.1 + 137175 0.66 0.898391
Target:  5'- cUCCGaaggcacggucGAGGCGCCaUC---GCUCGGCa -3'
miRNA:   3'- aGGGC-----------CUCCGUGGaAGguuUGAGCCG- -5'
31339 5' -56.4 NC_006623.1 + 133523 0.7 0.711753
Target:  5'- gUCCGGGGuGCGcCCUUCCGcuuuCUUGGUu -3'
miRNA:   3'- aGGGCCUC-CGU-GGAAGGUuu--GAGCCG- -5'
31339 5' -56.4 NC_006623.1 + 133478 0.73 0.501273
Target:  5'- gUCCCcGAGGaCACCgagcacgaugaUCCAAACUCGGa -3'
miRNA:   3'- -AGGGcCUCC-GUGGa----------AGGUUUGAGCCg -5'
31339 5' -56.4 NC_006623.1 + 129856 1.12 0.001578
Target:  5'- cUCCCGGAGGCACCUUCCAAACUCGGCa -3'
miRNA:   3'- -AGGGCCUCCGUGGAAGGUUUGAGCCG- -5'
31339 5' -56.4 NC_006623.1 + 129701 0.67 0.863462
Target:  5'- cUCCgGGAGGaACCaUCCAagagAACcUGGCg -3'
miRNA:   3'- -AGGgCCUCCgUGGaAGGU----UUGaGCCG- -5'
31339 5' -56.4 NC_006623.1 + 125297 0.68 0.805237
Target:  5'- gUUCgGcGAGGCgcucgacGCCUUCCGcGgUCGGCa -3'
miRNA:   3'- -AGGgC-CUCCG-------UGGAAGGUuUgAGCCG- -5'
31339 5' -56.4 NC_006623.1 + 123066 0.69 0.760338
Target:  5'- uUCCCGGGcGGCcCCgUUCCAccgUUCGGUu -3'
miRNA:   3'- -AGGGCCU-CCGuGG-AAGGUuu-GAGCCG- -5'
31339 5' -56.4 NC_006623.1 + 56601 0.66 0.904706
Target:  5'- aUCCUGGAGGCACUauggguUUCCA----UGGg -3'
miRNA:   3'- -AGGGCCUCCGUGG------AAGGUuugaGCCg -5'
31339 5' -56.4 NC_006623.1 + 45825 0.7 0.671623
Target:  5'- gUCCGcucGAGGCGCgCUcgCCGGGCUcCGGCg -3'
miRNA:   3'- aGGGC---CUCCGUG-GAa-GGUUUGA-GCCG- -5'
31339 5' -56.4 NC_006623.1 + 38244 0.66 0.896452
Target:  5'- gCCCGGAcGGUugCUgacucucgcuuauaUCgAAGCUUGGg -3'
miRNA:   3'- aGGGCCU-CCGugGA--------------AGgUUUGAGCCg -5'
31339 5' -56.4 NC_006623.1 + 17116 0.68 0.79724
Target:  5'- cUCCCu---GCACCUUCU--ACUCGGCc -3'
miRNA:   3'- -AGGGccucCGUGGAAGGuuUGAGCCG- -5'
31339 5' -56.4 NC_006623.1 + 7081 0.73 0.508979
Target:  5'- uUCCCGGGGGaagaaa-CGGACUCGGCa -3'
miRNA:   3'- -AGGGCCUCCguggaagGUUUGAGCCG- -5'
31339 5' -56.4 NC_006623.1 + 6599 0.73 0.510914
Target:  5'- -aCUGGgcuguggcauguAGGCACg-UCCAAGCUCGGCu -3'
miRNA:   3'- agGGCC------------UCCGUGgaAGGUUUGAGCCG- -5'
31339 5' -56.4 NC_006623.1 + 1305 0.69 0.741177
Target:  5'- aCCgCGGAGGUACaugCCAAcC-CGGCg -3'
miRNA:   3'- aGG-GCCUCCGUGgaaGGUUuGaGCCG- -5'
31339 5' -56.4 NC_006623.1 + 1254 0.68 0.79724
Target:  5'- aUCCCuGAGGgGCCUacCCAGAucuucggagcCUUGGCa -3'
miRNA:   3'- -AGGGcCUCCgUGGAa-GGUUU----------GAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.