Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31339 | 5' | -56.4 | NC_006623.1 | + | 56601 | 0.66 | 0.904706 |
Target: 5'- aUCCUGGAGGCACUauggguUUCCA----UGGg -3' miRNA: 3'- -AGGGCCUCCGUGG------AAGGUuugaGCCg -5' |
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31339 | 5' | -56.4 | NC_006623.1 | + | 129856 | 1.12 | 0.001578 |
Target: 5'- cUCCCGGAGGCACCUUCCAAACUCGGCa -3' miRNA: 3'- -AGGGCCUCCGUGGAAGGUUUGAGCCG- -5' |
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31339 | 5' | -56.4 | NC_006623.1 | + | 133523 | 0.7 | 0.711753 |
Target: 5'- gUCCGGGGuGCGcCCUUCCGcuuuCUUGGUu -3' miRNA: 3'- aGGGCCUC-CGU-GGAAGGUuu--GAGCCG- -5' |
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31339 | 5' | -56.4 | NC_006623.1 | + | 1305 | 0.69 | 0.741177 |
Target: 5'- aCCgCGGAGGUACaugCCAAcC-CGGCg -3' miRNA: 3'- aGG-GCCUCCGUGgaaGGUUuGaGCCG- -5' |
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31339 | 5' | -56.4 | NC_006623.1 | + | 138546 | 0.69 | 0.760338 |
Target: 5'- uUCCCGGGcGGCcCCgUUCCAccgUUCGGUu -3' miRNA: 3'- -AGGGCCU-CCGuGG-AAGGUuu-GAGCCG- -5' |
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31339 | 5' | -56.4 | NC_006623.1 | + | 17116 | 0.68 | 0.79724 |
Target: 5'- cUCCCu---GCACCUUCU--ACUCGGCc -3' miRNA: 3'- -AGGGccucCGUGGAAGGuuUGAGCCG- -5' |
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31339 | 5' | -56.4 | NC_006623.1 | + | 125297 | 0.68 | 0.805237 |
Target: 5'- gUUCgGcGAGGCgcucgacGCCUUCCGcGgUCGGCa -3' miRNA: 3'- -AGGgC-CUCCG-------UGGAAGGUuUgAGCCG- -5' |
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31339 | 5' | -56.4 | NC_006623.1 | + | 139716 | 0.67 | 0.870881 |
Target: 5'- gCCCGGc-GCaACCguagccgUCC-AACUCGGCc -3' miRNA: 3'- aGGGCCucCG-UGGa------AGGuUUGAGCCG- -5' |
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31339 | 5' | -56.4 | NC_006623.1 | + | 38244 | 0.66 | 0.896452 |
Target: 5'- gCCCGGAcGGUugCUgacucucgcuuauaUCgAAGCUUGGg -3' miRNA: 3'- aGGGCCU-CCGugGA--------------AGgUUUGAGCCg -5' |
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31339 | 5' | -56.4 | NC_006623.1 | + | 133478 | 0.73 | 0.501273 |
Target: 5'- gUCCCcGAGGaCACCgagcacgaugaUCCAAACUCGGa -3' miRNA: 3'- -AGGGcCUCC-GUGGa----------AGGUUUGAGCCg -5' |
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31339 | 5' | -56.4 | NC_006623.1 | + | 137175 | 0.66 | 0.898391 |
Target: 5'- cUCCGaaggcacggucGAGGCGCCaUC---GCUCGGCa -3' miRNA: 3'- aGGGC-----------CUCCGUGGaAGguuUGAGCCG- -5' |
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31339 | 5' | -56.4 | NC_006623.1 | + | 129701 | 0.67 | 0.863462 |
Target: 5'- cUCCgGGAGGaACCaUCCAagagAACcUGGCg -3' miRNA: 3'- -AGGgCCUCCgUGGaAGGU----UUGaGCCG- -5' |
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31339 | 5' | -56.4 | NC_006623.1 | + | 1254 | 0.68 | 0.79724 |
Target: 5'- aUCCCuGAGGgGCCUacCCAGAucuucggagcCUUGGCa -3' miRNA: 3'- -AGGGcCUCCgUGGAa-GGUUU----------GAGCCG- -5' |
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31339 | 5' | -56.4 | NC_006623.1 | + | 123066 | 0.69 | 0.760338 |
Target: 5'- uUCCCGGGcGGCcCCgUUCCAccgUUCGGUu -3' miRNA: 3'- -AGGGCCU-CCGuGG-AAGGUuu-GAGCCG- -5' |
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31339 | 5' | -56.4 | NC_006623.1 | + | 45825 | 0.7 | 0.671623 |
Target: 5'- gUCCGcucGAGGCGCgCUcgCCGGGCUcCGGCg -3' miRNA: 3'- aGGGC---CUCCGUG-GAa-GGUUUGA-GCCG- -5' |
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31339 | 5' | -56.4 | NC_006623.1 | + | 6599 | 0.73 | 0.510914 |
Target: 5'- -aCUGGgcuguggcauguAGGCACg-UCCAAGCUCGGCu -3' miRNA: 3'- agGGCC------------UCCGUGgaAGGUUUGAGCCG- -5' |
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31339 | 5' | -56.4 | NC_006623.1 | + | 7081 | 0.73 | 0.508979 |
Target: 5'- uUCCCGGGGGaagaaa-CGGACUCGGCa -3' miRNA: 3'- -AGGGCCUCCguggaagGUUUGAGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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