miRNA display CGI


Results 21 - 32 of 32 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3134 5' -59.3 NC_001493.1 + 27944 0.69 0.600316
Target:  5'- gGAGA-UGGAGUguGCCGAgAGGAGgACGa -3'
miRNA:   3'- gCUCUgGCCUCG--CGGCUgUCCUC-UGC- -5'
3134 5' -59.3 NC_001493.1 + 56108 0.69 0.590403
Target:  5'- uGAGACCGGGGUGgucUCGGaAGGAcGACGc -3'
miRNA:   3'- gCUCUGGCCUCGC---GGCUgUCCU-CUGC- -5'
3134 5' -59.3 NC_001493.1 + 21557 0.69 0.590403
Target:  5'- gGAGACC-GAGUGauGACGGGAGAa- -3'
miRNA:   3'- gCUCUGGcCUCGCggCUGUCCUCUgc -5'
3134 5' -59.3 NC_001493.1 + 8415 0.72 0.430663
Target:  5'- uCGGuGCUGGAGCGCgGGucuCAGGGGACa -3'
miRNA:   3'- -GCUcUGGCCUCGCGgCU---GUCCUCUGc -5'
3134 5' -59.3 NC_001493.1 + 123969 0.72 0.430663
Target:  5'- uCGGuGCUGGAGCGCgGGucuCAGGGGACa -3'
miRNA:   3'- -GCUcUGGCCUCGCGgCU---GUCCUCUGc -5'
3134 5' -59.3 NC_001493.1 + 5298 0.73 0.380481
Target:  5'- cCGGuGACCGGGGgGCUGGCGGGuGAg- -3'
miRNA:   3'- -GCU-CUGGCCUCgCGGCUGUCCuCUgc -5'
3134 5' -59.3 NC_001493.1 + 120852 0.73 0.380481
Target:  5'- cCGGuGACCGGGGgGCUGGCGGGuGAg- -3'
miRNA:   3'- -GCU-CUGGCCUCgCGGCUGUCCuCUgc -5'
3134 5' -59.3 NC_001493.1 + 20051 0.74 0.341757
Target:  5'- -cGGGCCGGcGCGacucCCGACGGGGGACu -3'
miRNA:   3'- gcUCUGGCCuCGC----GGCUGUCCUCUGc -5'
3134 5' -59.3 NC_001493.1 + 96241 0.74 0.327085
Target:  5'- uCGGGGCCGuAGCGCCcGCGGGAuGACu -3'
miRNA:   3'- -GCUCUGGCcUCGCGGcUGUCCU-CUGc -5'
3134 5' -59.3 NC_001493.1 + 112708 0.78 0.205852
Target:  5'- cCGAGAUCGaGGCGCUGGCAGGAcucGGCGu -3'
miRNA:   3'- -GCUCUGGCcUCGCGGCUGUCCU---CUGC- -5'
3134 5' -59.3 NC_001493.1 + 128710 1.09 0.001537
Target:  5'- gCGAGACCGGAGCGCCGACAGGAGACGa -3'
miRNA:   3'- -GCUCUGGCCUCGCGGCUGUCCUCUGC- -5'
3134 5' -59.3 NC_001493.1 + 13155 1.09 0.001537
Target:  5'- gCGAGACCGGAGCGCCGACAGGAGACGa -3'
miRNA:   3'- -GCUCUGGCCUCGCGGCUGUCCUCUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.