Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31341 | 5' | -61.8 | NC_006623.1 | + | 111 | 0.68 | 0.52011 |
Target: 5'- uCGAaaUGGCGCGUUUGGCCcccugccagcGCGGcccugcguucguGCGCa -3' miRNA: 3'- cGCU--GCCGCGCGAAUCGG----------CGCC------------CGCG- -5' |
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31341 | 5' | -61.8 | NC_006623.1 | + | 139618 | 0.68 | 0.567743 |
Target: 5'- uCGACGG-GUGCUac-CCGCuGGCGCu -3' miRNA: 3'- cGCUGCCgCGCGAaucGGCGcCCGCG- -5' |
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31341 | 5' | -61.8 | NC_006623.1 | + | 129943 | 0.68 | 0.566778 |
Target: 5'- aGCuGACGGCGC-CUUcaGGCgGCGGauaugucGCGUg -3' miRNA: 3'- -CG-CUGCCGCGcGAA--UCGgCGCC-------CGCG- -5' |
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31341 | 5' | -61.8 | NC_006623.1 | + | 124359 | 0.68 | 0.558112 |
Target: 5'- gGCGccgacguuaGCGGCGaCGCUc-GCCGCGucGGCGg -3' miRNA: 3'- -CGC---------UGCCGC-GCGAauCGGCGC--CCGCg -5' |
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31341 | 5' | -61.8 | NC_006623.1 | + | 110373 | 0.68 | 0.533306 |
Target: 5'- cCGACGGaccCGCGCguauuuuuaauucgUGuCCGCaGGGCGCg -3' miRNA: 3'- cGCUGCC---GCGCGa-------------AUcGGCG-CCCGCG- -5' |
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31341 | 5' | -61.8 | NC_006623.1 | + | 139335 | 0.68 | 0.52011 |
Target: 5'- gGCGACGcGCGgccuagGUUUgaGGCCGCGGuGgGCg -3' miRNA: 3'- -CGCUGC-CGCg-----CGAA--UCGGCGCC-CgCG- -5' |
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31341 | 5' | -61.8 | NC_006623.1 | + | 138147 | 0.69 | 0.510765 |
Target: 5'- gGCGGcCGGCGCGCUgcucUGGUuauuccagugCGCGGacCGCg -3' miRNA: 3'- -CGCU-GCCGCGCGA----AUCG----------GCGCCc-GCG- -5' |
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31341 | 5' | -61.8 | NC_006623.1 | + | 146227 | 0.7 | 0.456306 |
Target: 5'- uGCGACGGgGgGC-UAGUC-CGGGCa- -3' miRNA: 3'- -CGCUGCCgCgCGaAUCGGcGCCCGcg -5' |
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31341 | 5' | -61.8 | NC_006623.1 | + | 114814 | 0.7 | 0.421787 |
Target: 5'- ---cCGGaUGCGCcagGGgCGCGGGCGCg -3' miRNA: 3'- cgcuGCC-GCGCGaa-UCgGCGCCCGCG- -5' |
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31341 | 5' | -61.8 | NC_006623.1 | + | 110973 | 0.68 | 0.567743 |
Target: 5'- uGUGAgGGUGCGaccugUAGCUcCGGaGCGCu -3' miRNA: 3'- -CGCUgCCGCGCga---AUCGGcGCC-CGCG- -5' |
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31341 | 5' | -61.8 | NC_006623.1 | + | 46013 | 0.67 | 0.60662 |
Target: 5'- aUGGgGGUGCGCcggAGCCcgGCGaGCGCg -3' miRNA: 3'- cGCUgCCGCGCGaa-UCGG--CGCcCGCG- -5' |
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31341 | 5' | -61.8 | NC_006623.1 | + | 491 | 0.67 | 0.626188 |
Target: 5'- uGUGGCugcuGUGCGCU--GCCGCGcuuuuaauGGCGCu -3' miRNA: 3'- -CGCUGc---CGCGCGAauCGGCGC--------CCGCG- -5' |
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31341 | 5' | -61.8 | NC_006623.1 | + | 137886 | 1.12 | 0.000585 |
Target: 5'- uGCGACGGCGCGCUUAGCCGCGGGCGCu -3' miRNA: 3'- -CGCUGCCGCGCGAAUCGGCGCCCGCG- -5' |
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31341 | 5' | -61.8 | NC_006623.1 | + | 108979 | 0.66 | 0.684764 |
Target: 5'- uCGugGGUGCGacgGGUCGUGcGGCa- -3' miRNA: 3'- cGCugCCGCGCgaaUCGGCGC-CCGcg -5' |
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31341 | 5' | -61.8 | NC_006623.1 | + | 148597 | 0.66 | 0.655554 |
Target: 5'- cGCGGCGGCGguUGCgc-GCgGUGGGaauGCc -3' miRNA: 3'- -CGCUGCCGC--GCGaauCGgCGCCCg--CG- -5' |
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31341 | 5' | -61.8 | NC_006623.1 | + | 122310 | 0.66 | 0.655554 |
Target: 5'- uCGACuaacuCGCGCcagAGCCGCGaGGCGa -3' miRNA: 3'- cGCUGcc---GCGCGaa-UCGGCGC-CCGCg -5' |
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31341 | 5' | -61.8 | NC_006623.1 | + | 116691 | 0.66 | 0.645773 |
Target: 5'- gGCGGCGGCGacggaGCagAGCCuuCGGcCGCc -3' miRNA: 3'- -CGCUGCCGCg----CGaaUCGGc-GCCcGCG- -5' |
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31341 | 5' | -61.8 | NC_006623.1 | + | 138840 | 0.66 | 0.645773 |
Target: 5'- uGCGAgGGacgcuggaauCGCGCUggcGCUgGCGcGGCGCc -3' miRNA: 3'- -CGCUgCC----------GCGCGAau-CGG-CGC-CCGCG- -5' |
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31341 | 5' | -61.8 | NC_006623.1 | + | 122032 | 0.66 | 0.635982 |
Target: 5'- gGgGGCGGCGgGauguccggcGGUCGCaaagGGGCGCg -3' miRNA: 3'- -CgCUGCCGCgCgaa------UCGGCG----CCCGCG- -5' |
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31341 | 5' | -61.8 | NC_006623.1 | + | 106400 | 0.67 | 0.626188 |
Target: 5'- --aAUGGCGUGUUgacuuaCGUGGGCGCg -3' miRNA: 3'- cgcUGCCGCGCGAaucg--GCGCCCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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