miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31342 5' -45.5 NC_006623.1 + 124677 0.66 0.999997
Target:  5'- uCCUGGGaagGGAAAACA-GCUCccCGGa -3'
miRNA:   3'- -GGAUUUa--CCUUUUGUaCGAGcuGCCc -5'
31342 5' -45.5 NC_006623.1 + 35480 0.66 0.999993
Target:  5'- uCCguagAAGUGGA--AUA-GCUCG-CGGGu -3'
miRNA:   3'- -GGa---UUUACCUuuUGUaCGAGCuGCCC- -5'
31342 5' -45.5 NC_006623.1 + 133663 0.66 0.999991
Target:  5'- uCCgaguuUGGAucauCGUGCUCGGuguccuCGGGg -3'
miRNA:   3'- -GGauuu-ACCUuuu-GUACGAGCU------GCCC- -5'
31342 5' -45.5 NC_006623.1 + 28822 0.66 0.999991
Target:  5'- ------cGGAAAuCGUGCgUGGCGGGc -3'
miRNA:   3'- ggauuuaCCUUUuGUACGaGCUGCCC- -5'
31342 5' -45.5 NC_006623.1 + 8230 0.67 0.999982
Target:  5'- gCUGAGUGGc--ACuUGUccCGACGGGa -3'
miRNA:   3'- gGAUUUACCuuuUGuACGa-GCUGCCC- -5'
31342 5' -45.5 NC_006623.1 + 31594 0.67 0.99998
Target:  5'- gUCUGua-GGucauuccaGUGCUCGGCGGGc -3'
miRNA:   3'- -GGAUuuaCCuuuug---UACGAGCUGCCC- -5'
31342 5' -45.5 NC_006623.1 + 60035 0.68 0.999911
Target:  5'- gCUAGAaaugaugauuuuauUGGAAAGCAUGU---ACGGGa -3'
miRNA:   3'- gGAUUU--------------ACCUUUUGUACGagcUGCCC- -5'
31342 5' -45.5 NC_006623.1 + 60371 0.68 0.999892
Target:  5'- gCUGAAUuaGAAAACGaGCUCGA-GGGa -3'
miRNA:   3'- gGAUUUAc-CUUUUGUaCGAGCUgCCC- -5'
31342 5' -45.5 NC_006623.1 + 80024 0.69 0.999766
Target:  5'- gCUAAGUGGcGAGuCA--CUUGACGGGa -3'
miRNA:   3'- gGAUUUACCuUUU-GUacGAGCUGCCC- -5'
31342 5' -45.5 NC_006623.1 + 1859 0.69 0.999766
Target:  5'- gCUGGAUGGAc--CAUcCUCGACuGGGc -3'
miRNA:   3'- gGAUUUACCUuuuGUAcGAGCUG-CCC- -5'
31342 5' -45.5 NC_006623.1 + 115187 0.7 0.999261
Target:  5'- aCgUGAGUgaGGAAGGgGUGCUUaACGGGa -3'
miRNA:   3'- -GgAUUUA--CCUUUUgUACGAGcUGCCC- -5'
31342 5' -45.5 NC_006623.1 + 146425 0.7 0.999261
Target:  5'- aCgUGAGUgaGGAAGGgGUGCUUaACGGGa -3'
miRNA:   3'- -GgAUUUA--CCUUUUgUACGAGcUGCCC- -5'
31342 5' -45.5 NC_006623.1 + 15484 0.7 0.998882
Target:  5'- uCCUAGcuguugGUGGAGGA-AUGCUUGugGGu -3'
miRNA:   3'- -GGAUU------UACCUUUUgUACGAGCugCCc -5'
31342 5' -45.5 NC_006623.1 + 48526 0.7 0.998638
Target:  5'- -aUGGAUaugGGAAAGCAaaCUCGugGGGg -3'
miRNA:   3'- ggAUUUA---CCUUUUGUacGAGCugCCC- -5'
31342 5' -45.5 NC_006623.1 + 107666 0.73 0.99149
Target:  5'- aUUGGAcGGAAGuCAUGCUCGGaGGGg -3'
miRNA:   3'- gGAUUUaCCUUUuGUACGAGCUgCCC- -5'
31342 5' -45.5 NC_006623.1 + 132748 0.73 0.990222
Target:  5'- uUCUAAcGUGGAcGACAUGauaUCGGCGGc -3'
miRNA:   3'- -GGAUU-UACCUuUUGUACg--AGCUGCCc -5'
31342 5' -45.5 NC_006623.1 + 121010 0.73 0.988661
Target:  5'- cCCUGAAUgugaucgGGAAGugAUaUUCGGCGGGa -3'
miRNA:   3'- -GGAUUUA-------CCUUUugUAcGAGCUGCCC- -5'
31342 5' -45.5 NC_006623.1 + 140602 0.73 0.988661
Target:  5'- cCCUGAAUgugaucgGGAAGugAUaUUCGGCGGGa -3'
miRNA:   3'- -GGAUUUA-------CCUUUugUAcGAGCUGCCC- -5'
31342 5' -45.5 NC_006623.1 + 83386 0.74 0.987246
Target:  5'- ---cAGUGGGAGACAaaauguauaaUGCgCGGCGGGg -3'
miRNA:   3'- ggauUUACCUUUUGU----------ACGaGCUGCCC- -5'
31342 5' -45.5 NC_006623.1 + 55901 0.77 0.926857
Target:  5'- cCCUGucGAUGGcaaaaaguaacgacGGAGCAUGCUUGAgGGGu -3'
miRNA:   3'- -GGAU--UUACC--------------UUUUGUACGAGCUgCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.