miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31343 3' -61 NC_006623.1 + 122410 0.67 0.617334
Target:  5'- uGgCUCGACuCUCUGgACGGUGACcGCu- -3'
miRNA:   3'- -CgGAGCUG-GGGACgUGCCGCUG-CGuu -5'
31343 3' -61 NC_006623.1 + 139202 0.67 0.617334
Target:  5'- uGgCUCGACuCUCUGgACGGUGACcGCu- -3'
miRNA:   3'- -CgGAGCUG-GGGACgUGCCGCUG-CGuu -5'
31343 3' -61 NC_006623.1 + 121570 0.67 0.607378
Target:  5'- gGCUUCGGCCgCCaGgGCGGguaGGCGCAc -3'
miRNA:   3'- -CGGAGCUGG-GGaCgUGCCg--CUGCGUu -5'
31343 3' -61 NC_006623.1 + 140042 0.67 0.607378
Target:  5'- gGCUUCGGCCgCCaGgGCGGguaGGCGCAc -3'
miRNA:   3'- -CGGAGCUGG-GGaCgUGCCg--CUGCGUu -5'
31343 3' -61 NC_006623.1 + 107 0.68 0.571732
Target:  5'- cGCCUCGAaauggcgcguuuggcCCCCUGCcagcGCGGCccugcguucguGCGCAGc -3'
miRNA:   3'- -CGGAGCU---------------GGGGACG----UGCCGc----------UGCGUU- -5'
31343 3' -61 NC_006623.1 + 101679 0.69 0.500384
Target:  5'- -gCUUGACCCUacccgUGUugGGUGugGCGGa -3'
miRNA:   3'- cgGAGCUGGGG-----ACGugCCGCugCGUU- -5'
31343 3' -61 NC_006623.1 + 122759 0.69 0.472566
Target:  5'- cGCCUCGAUCUUUGCGaGG-GACGCu- -3'
miRNA:   3'- -CGGAGCUGGGGACGUgCCgCUGCGuu -5'
31343 3' -61 NC_006623.1 + 138852 0.69 0.472566
Target:  5'- cGCCUCGAUCUUUGCGaGG-GACGCu- -3'
miRNA:   3'- -CGGAGCUGGGGACGUgCCgCUGCGuu -5'
31343 3' -61 NC_006623.1 + 40370 0.71 0.378007
Target:  5'- cGCCgugCGGCgaCCUGCGgcuUGGCGACGCu- -3'
miRNA:   3'- -CGGa--GCUGg-GGACGU---GCCGCUGCGuu -5'
31343 3' -61 NC_006623.1 + 121675 1.07 0.001222
Target:  5'- gGCCUCGACCCCUGCACGGCGACGCAAg -3'
miRNA:   3'- -CGGAGCUGGGGACGUGCCGCUGCGUU- -5'
31343 3' -61 NC_006623.1 + 139937 1.07 0.001222
Target:  5'- gGCCUCGACCCCUGCACGGCGACGCAAg -3'
miRNA:   3'- -CGGAGCUGGGGACGUGCCGCUGCGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.