Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31343 | 5' | -52.7 | NC_006623.1 | + | 56047 | 0.66 | 0.986461 |
Target: 5'- gUCUUGGC-AGUAG-UAGAGGAcaGCGCa -3' miRNA: 3'- -GGAGCUGcUCGUCuAUCUCCUc-UGCG- -5' |
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31343 | 5' | -52.7 | NC_006623.1 | + | 64510 | 0.66 | 0.982677 |
Target: 5'- gCCUCauuuauaGAUGGGagcGAUGGAGGAcccgaGGCGCu -3' miRNA: 3'- -GGAG-------CUGCUCgu-CUAUCUCCU-----CUGCG- -5' |
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31343 | 5' | -52.7 | NC_006623.1 | + | 1173 | 0.66 | 0.97621 |
Target: 5'- gCUCGGCGAGgaGGGUGGGGugugcggcacaGAGcaaaGCGCg -3' miRNA: 3'- gGAGCUGCUCg-UCUAUCUC-----------CUC----UGCG- -5' |
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31343 | 5' | -52.7 | NC_006623.1 | + | 67302 | 0.67 | 0.973614 |
Target: 5'- --aCGGCGGGCAGuauUGGcGGAGA-GCc -3' miRNA: 3'- ggaGCUGCUCGUCu--AUCuCCUCUgCG- -5' |
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31343 | 5' | -52.7 | NC_006623.1 | + | 22726 | 0.67 | 0.967507 |
Target: 5'- gCUaGACGAGCGGucguuucuguugaAUGGAguucuggcccagGGGGGCGCa -3' miRNA: 3'- gGAgCUGCUCGUC-------------UAUCU------------CCUCUGCG- -5' |
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31343 | 5' | -52.7 | NC_006623.1 | + | 1364 | 0.67 | 0.963599 |
Target: 5'- aCCUCGGaGAGCuuGGAUagcguggcggcugaGGGGGGGAgGUg -3' miRNA: 3'- -GGAGCUgCUCG--UCUA--------------UCUCCUCUgCG- -5' |
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31343 | 5' | -52.7 | NC_006623.1 | + | 143815 | 0.67 | 0.961173 |
Target: 5'- -gUCGAUGAcccGCAGGUucGGGAGGcCGCg -3' miRNA: 3'- ggAGCUGCU---CGUCUAucUCCUCU-GCG- -5' |
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31343 | 5' | -52.7 | NC_006623.1 | + | 117796 | 0.67 | 0.961173 |
Target: 5'- -gUCGAUGAcccGCAGGUucGGGAGGcCGCg -3' miRNA: 3'- ggAGCUGCU---CGUCUAucUCCUCU-GCG- -5' |
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31343 | 5' | -52.7 | NC_006623.1 | + | 1846 | 0.68 | 0.953634 |
Target: 5'- uCCUCGACuGGGCAGA--GAcuAGAUGCc -3' miRNA: 3'- -GGAGCUG-CUCGUCUauCUccUCUGCG- -5' |
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31343 | 5' | -52.7 | NC_006623.1 | + | 51955 | 0.68 | 0.940572 |
Target: 5'- uCCUCGGCuAGuCGGGU-GAGGcaaaauAGACGCc -3' miRNA: 3'- -GGAGCUGcUC-GUCUAuCUCC------UCUGCG- -5' |
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31343 | 5' | -52.7 | NC_006623.1 | + | 130468 | 0.7 | 0.904182 |
Target: 5'- cCCgCGACGAGUauaccguuaugcgcgAGggGGAGGGGcCGCc -3' miRNA: 3'- -GGaGCUGCUCG---------------UCuaUCUCCUCuGCG- -5' |
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31343 | 5' | -52.7 | NC_006623.1 | + | 39764 | 0.7 | 0.881364 |
Target: 5'- ----uACGuGgAGAUAGGGGAGAUGCa -3' miRNA: 3'- ggagcUGCuCgUCUAUCUCCUCUGCG- -5' |
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31343 | 5' | -52.7 | NC_006623.1 | + | 131387 | 0.7 | 0.874149 |
Target: 5'- gCUCGgagcGCGAGCGGuuucGGGGGGCGUg -3' miRNA: 3'- gGAGC----UGCUCGUCuaucUCCUCUGCG- -5' |
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31343 | 5' | -52.7 | NC_006623.1 | + | 76354 | 0.71 | 0.859062 |
Target: 5'- aCC-CaGCGcAGCAGAUGGAGGAuaaGCGCc -3' miRNA: 3'- -GGaGcUGC-UCGUCUAUCUCCUc--UGCG- -5' |
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31343 | 5' | -52.7 | NC_006623.1 | + | 108269 | 0.73 | 0.772272 |
Target: 5'- aCgUCGACGAGCAGAUGGAacucuuuGCGCc -3' miRNA: 3'- -GgAGCUGCUCGUCUAUCUccuc---UGCG- -5' |
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31343 | 5' | -52.7 | NC_006623.1 | + | 121709 | 1.15 | 0.002894 |
Target: 5'- gCCUCGACGAGCAGAUAGAGGAGACGCg -3' miRNA: 3'- -GGAGCUGCUCGUCUAUCUCCUCUGCG- -5' |
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31343 | 5' | -52.7 | NC_006623.1 | + | 139903 | 1.15 | 0.002894 |
Target: 5'- gCCUCGACGAGCAGAUAGAGGAGACGCg -3' miRNA: 3'- -GGAGCUGCUCGUCUAUCUCCUCUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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