miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31343 5' -52.7 NC_006623.1 + 56047 0.66 0.986461
Target:  5'- gUCUUGGC-AGUAG-UAGAGGAcaGCGCa -3'
miRNA:   3'- -GGAGCUGcUCGUCuAUCUCCUc-UGCG- -5'
31343 5' -52.7 NC_006623.1 + 64510 0.66 0.982677
Target:  5'- gCCUCauuuauaGAUGGGagcGAUGGAGGAcccgaGGCGCu -3'
miRNA:   3'- -GGAG-------CUGCUCgu-CUAUCUCCU-----CUGCG- -5'
31343 5' -52.7 NC_006623.1 + 1173 0.66 0.97621
Target:  5'- gCUCGGCGAGgaGGGUGGGGugugcggcacaGAGcaaaGCGCg -3'
miRNA:   3'- gGAGCUGCUCg-UCUAUCUC-----------CUC----UGCG- -5'
31343 5' -52.7 NC_006623.1 + 67302 0.67 0.973614
Target:  5'- --aCGGCGGGCAGuauUGGcGGAGA-GCc -3'
miRNA:   3'- ggaGCUGCUCGUCu--AUCuCCUCUgCG- -5'
31343 5' -52.7 NC_006623.1 + 22726 0.67 0.967507
Target:  5'- gCUaGACGAGCGGucguuucuguugaAUGGAguucuggcccagGGGGGCGCa -3'
miRNA:   3'- gGAgCUGCUCGUC-------------UAUCU------------CCUCUGCG- -5'
31343 5' -52.7 NC_006623.1 + 1364 0.67 0.963599
Target:  5'- aCCUCGGaGAGCuuGGAUagcguggcggcugaGGGGGGGAgGUg -3'
miRNA:   3'- -GGAGCUgCUCG--UCUA--------------UCUCCUCUgCG- -5'
31343 5' -52.7 NC_006623.1 + 143815 0.67 0.961173
Target:  5'- -gUCGAUGAcccGCAGGUucGGGAGGcCGCg -3'
miRNA:   3'- ggAGCUGCU---CGUCUAucUCCUCU-GCG- -5'
31343 5' -52.7 NC_006623.1 + 117796 0.67 0.961173
Target:  5'- -gUCGAUGAcccGCAGGUucGGGAGGcCGCg -3'
miRNA:   3'- ggAGCUGCU---CGUCUAucUCCUCU-GCG- -5'
31343 5' -52.7 NC_006623.1 + 1846 0.68 0.953634
Target:  5'- uCCUCGACuGGGCAGA--GAcuAGAUGCc -3'
miRNA:   3'- -GGAGCUG-CUCGUCUauCUccUCUGCG- -5'
31343 5' -52.7 NC_006623.1 + 51955 0.68 0.940572
Target:  5'- uCCUCGGCuAGuCGGGU-GAGGcaaaauAGACGCc -3'
miRNA:   3'- -GGAGCUGcUC-GUCUAuCUCC------UCUGCG- -5'
31343 5' -52.7 NC_006623.1 + 130468 0.7 0.904182
Target:  5'- cCCgCGACGAGUauaccguuaugcgcgAGggGGAGGGGcCGCc -3'
miRNA:   3'- -GGaGCUGCUCG---------------UCuaUCUCCUCuGCG- -5'
31343 5' -52.7 NC_006623.1 + 39764 0.7 0.881364
Target:  5'- ----uACGuGgAGAUAGGGGAGAUGCa -3'
miRNA:   3'- ggagcUGCuCgUCUAUCUCCUCUGCG- -5'
31343 5' -52.7 NC_006623.1 + 131387 0.7 0.874149
Target:  5'- gCUCGgagcGCGAGCGGuuucGGGGGGCGUg -3'
miRNA:   3'- gGAGC----UGCUCGUCuaucUCCUCUGCG- -5'
31343 5' -52.7 NC_006623.1 + 76354 0.71 0.859062
Target:  5'- aCC-CaGCGcAGCAGAUGGAGGAuaaGCGCc -3'
miRNA:   3'- -GGaGcUGC-UCGUCUAUCUCCUc--UGCG- -5'
31343 5' -52.7 NC_006623.1 + 108269 0.73 0.772272
Target:  5'- aCgUCGACGAGCAGAUGGAacucuuuGCGCc -3'
miRNA:   3'- -GgAGCUGCUCGUCUAUCUccuc---UGCG- -5'
31343 5' -52.7 NC_006623.1 + 121709 1.15 0.002894
Target:  5'- gCCUCGACGAGCAGAUAGAGGAGACGCg -3'
miRNA:   3'- -GGAGCUGCUCGUCUAUCUCCUCUGCG- -5'
31343 5' -52.7 NC_006623.1 + 139903 1.15 0.002894
Target:  5'- gCCUCGACGAGCAGAUAGAGGAGACGCg -3'
miRNA:   3'- -GGAGCUGCUCGUCUAUCUCCUCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.