miRNA display CGI

Results 1 - 10 of 10 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
31344	3'	-58.2	NC_006623.1	+	121368	0.66	0.819699
	Target:  5'- gACCCggaGUCGGAggaagaGCAGCCuGGGUGCc -3' miRNA:   3'- gUGGGag-CAGCCU------CGUCGG-UUCGUGc -5'
31344	3'	-58.2	NC_006623.1	+	140244	0.66	0.819699
	Target:  5'- gACCCggaGUCGGAggaagaGCAGCCuGGGUGCc -3' miRNA:   3'- gUGGGag-CAGCCU------CGUCGG-UUCGUGc -5'
31344	3'	-58.2	NC_006623.1	+	98627	0.67	0.774393
	Target:  5'- cCAUgUUUGUacauggcauguggCGGAgGCAGCCAAGCGCu -3' miRNA:   3'- -GUGgGAGCA-------------GCCU-CGUCGGUUCGUGc -5'
31344	3'	-58.2	NC_006623.1	+	51380	0.68	0.688304
	Target:  5'- aUACCuuCUCGUCGGAugcgcagaGCAGC--GGCGCGa -3' miRNA:   3'- -GUGG--GAGCAGCCU--------CGUCGguUCGUGC- -5'
31344	3'	-58.2	NC_006623.1	+	122089	0.7	0.584467
	Target:  5'- --gCCUCGUCGGAGuCGGCCGAcucgguagacccguGCAUu -3' miRNA:   3'- gugGGAGCAGCCUC-GUCGGUU--------------CGUGc -5'
31344	3'	-58.2	NC_006623.1	+	139523	0.7	0.584467
	Target:  5'- --gCCUCGUCGGAGuCGGCCGAcucgguagacccguGCAUu -3' miRNA:   3'- gugGGAGCAGCCUC-GUCGGUU--------------CGUGc -5'
31344	3'	-58.2	NC_006623.1	+	137207	0.71	0.518296
	Target:  5'- gCAUCCUcucgcgCGUCGGGGCAGCgauagcaaaCGAGCugGc -3' miRNA:   3'- -GUGGGA------GCAGCCUCGUCG---------GUUCGugC- -5'
31344	3'	-58.2	NC_006623.1	+	130361	0.72	0.480218
	Target:  5'- aGCCC-CGUCuGGGCcGCCGAGUugGa -3' miRNA:   3'- gUGGGaGCAGcCUCGuCGGUUCGugC- -5'
31344	3'	-58.2	NC_006623.1	+	116775	1.07	0.002329
	Target:  5'- uCACCCUCGUCGGAGCAGCCAAGCACGc -3' miRNA:   3'- -GUGGGAGCAGCCUCGUCGGUUCGUGC- -5'
31344	3'	-58.2	NC_006623.1	+	144836	1.07	0.002329
	Target:  5'- uCACCCUCGUCGGAGCAGCCAAGCACGc -3' miRNA:   3'- -GUGGGAGCAGCCUCGUCGGUUCGUGC- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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