miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31344 5' -48.3 NC_006623.1 + 76016 0.66 0.998722
Target:  5'- uAGCUcUCCAUGGa-UCUaGCgAAGggGGGa -3'
miRNA:   3'- -UCGA-AGGUACCgaAGA-UG-UUCuuCUC- -5'
31344 5' -48.3 NC_006623.1 + 113293 0.67 0.99774
Target:  5'- cGCUUCCuuauaagGGUUcCUGCGacgguAGAAGAGu -3'
miRNA:   3'- uCGAAGGua-----CCGAaGAUGU-----UCUUCUC- -5'
31344 5' -48.3 NC_006623.1 + 148319 0.67 0.99774
Target:  5'- cGCUUCCuuauaagGGUUcCUGCGacgguAGAAGAGu -3'
miRNA:   3'- uCGAAGGua-----CCGAaGAUGU-----UCUUCUC- -5'
31344 5' -48.3 NC_006623.1 + 146671 0.68 0.992874
Target:  5'- cGCUUCCuuuagGGCcgucgCUGCGuGGggGAGg -3'
miRNA:   3'- uCGAAGGua---CCGaa---GAUGU-UCuuCUC- -5'
31344 5' -48.3 NC_006623.1 + 114941 0.68 0.992874
Target:  5'- cGCUUCCuuuagGGCcgucgCUGCGuGGggGAGg -3'
miRNA:   3'- uCGAAGGua---CCGaa---GAUGU-UCuuCUC- -5'
31344 5' -48.3 NC_006623.1 + 52927 0.68 0.991759
Target:  5'- aAGUcagCCAUGGUUUCUACGA-AAGAa -3'
miRNA:   3'- -UCGaa-GGUACCGAAGAUGUUcUUCUc -5'
31344 5' -48.3 NC_006623.1 + 15305 0.71 0.957582
Target:  5'- uGGCaa-CAUGGCcugaUCUGCGAGggGGGc -3'
miRNA:   3'- -UCGaagGUACCGa---AGAUGUUCuuCUC- -5'
31344 5' -48.3 NC_006623.1 + 116809 1.09 0.012582
Target:  5'- cAGCUUCCAUGGCUUCUACAAGAAGAGu -3'
miRNA:   3'- -UCGAAGGUACCGAAGAUGUUCUUCUC- -5'
31344 5' -48.3 NC_006623.1 + 144802 1.09 0.012582
Target:  5'- cAGCUUCCAUGGCUUCUACAAGAAGAGu -3'
miRNA:   3'- -UCGAAGGUACCGAAGAUGUUCUUCUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.