miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3135 3' -54.3 NC_001493.1 + 23102 0.66 0.944607
Target:  5'- aCGUGU-CAUGUGUGCGu---CCGUGa -3'
miRNA:   3'- aGUACAuGUGCACGCGCuccuGGCAC- -5'
3135 3' -54.3 NC_001493.1 + 73454 0.66 0.944607
Target:  5'- -aGUGUGCACcgcaGCGCaggGGGGACCGc- -3'
miRNA:   3'- agUACAUGUGca--CGCG---CUCCUGGCac -5'
3135 3' -54.3 NC_001493.1 + 94202 0.66 0.929932
Target:  5'- uUCGUGUcGCACGUgGC-CGAGGAUgGg- -3'
miRNA:   3'- -AGUACA-UGUGCA-CGcGCUCCUGgCac -5'
3135 3' -54.3 NC_001493.1 + 89626 0.66 0.929932
Target:  5'- cUAUGUGCAC--GCGUGAGGGauGUGu -3'
miRNA:   3'- aGUACAUGUGcaCGCGCUCCUggCAC- -5'
3135 3' -54.3 NC_001493.1 + 17097 0.67 0.918344
Target:  5'- cUCAUGUauauGCGCGUucgguuuauccacGCGCGuGGcuCCGUGc -3'
miRNA:   3'- -AGUACA----UGUGCA-------------CGCGCuCCu-GGCAC- -5'
3135 3' -54.3 NC_001493.1 + 132651 0.67 0.918344
Target:  5'- cUCAUGUauauGCGCGUucgguuuauccacGCGCGuGGcuCCGUGc -3'
miRNA:   3'- -AGUACA----UGUGCA-------------CGCGCuCCu-GGCAC- -5'
3135 3' -54.3 NC_001493.1 + 123164 0.68 0.865247
Target:  5'- gUCAUGUACGCG-GgGaGAGGAguccguCCGUGc -3'
miRNA:   3'- -AGUACAUGUGCaCgCgCUCCU------GGCAC- -5'
3135 3' -54.3 NC_001493.1 + 7610 0.68 0.865247
Target:  5'- gUCAUGUACGCG-GgGaGAGGAguccguCCGUGc -3'
miRNA:   3'- -AGUACAUGUGCaCgCgCUCCU------GGCAC- -5'
3135 3' -54.3 NC_001493.1 + 45881 0.68 0.865247
Target:  5'- -gAUGUGCGgGcUGCGCGAGGcgGCCa-- -3'
miRNA:   3'- agUACAUGUgC-ACGCGCUCC--UGGcac -5'
3135 3' -54.3 NC_001493.1 + 71034 0.69 0.806953
Target:  5'- gCGUGUACAgCGaGgGCGAuGGACCGg- -3'
miRNA:   3'- aGUACAUGU-GCaCgCGCU-CCUGGCac -5'
3135 3' -54.3 NC_001493.1 + 37530 0.7 0.769877
Target:  5'- --uUGcGCAUGUGCGCGGGGAUgGa- -3'
miRNA:   3'- aguACaUGUGCACGCGCUCCUGgCac -5'
3135 3' -54.3 NC_001493.1 + 32751 0.71 0.73078
Target:  5'- -----cAUACGUGCGCGGGGGggUCGUGa -3'
miRNA:   3'- aguacaUGUGCACGCGCUCCU--GGCAC- -5'
3135 3' -54.3 NC_001493.1 + 59532 0.74 0.535762
Target:  5'- cUCGUGUACGCGgugGcCG-GAGaGACCGUGg -3'
miRNA:   3'- -AGUACAUGUGCa--C-GCgCUC-CUGGCAC- -5'
3135 3' -54.3 NC_001493.1 + 43693 0.78 0.345635
Target:  5'- cUCA---ACAUGUGCGCGAGGGCgGUGu -3'
miRNA:   3'- -AGUacaUGUGCACGCGCUCCUGgCAC- -5'
3135 3' -54.3 NC_001493.1 + 129976 1.1 0.003482
Target:  5'- aUCAUGUACACGUGCGCGAGGACCGUGa -3'
miRNA:   3'- -AGUACAUGUGCACGCGCUCCUGGCAC- -5'
3135 3' -54.3 NC_001493.1 + 14422 1.1 0.003482
Target:  5'- aUCAUGUACACGUGCGCGAGGACCGUGa -3'
miRNA:   3'- -AGUACAUGUGCACGCGCUCCUGGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.