Results 21 - 40 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3135 | 5' | -62.6 | NC_001493.1 | + | 18600 | 0.67 | 0.54822 |
Target: 5'- uGGUuccuACCCGCGaggguccUCCGggaaggguUCCucaggGCUCGCCCCg -3' miRNA: 3'- -CCG----UGGGCGC-------GGGU--------AGG-----UGAGCGGGG- -5' |
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3135 | 5' | -62.6 | NC_001493.1 | + | 124376 | 0.67 | 0.549175 |
Target: 5'- cGGCGCgUG-GCCCGUCCGUgucCGCaCCCc -3' miRNA: 3'- -CCGUGgGCgCGGGUAGGUGa--GCG-GGG- -5' |
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3135 | 5' | -62.6 | NC_001493.1 | + | 86982 | 0.67 | 0.568396 |
Target: 5'- gGGUuucaGCCCGUGUCCuggCCAa-CGUCCCc -3' miRNA: 3'- -CCG----UGGGCGCGGGua-GGUgaGCGGGG- -5' |
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3135 | 5' | -62.6 | NC_001493.1 | + | 5338 | 0.67 | 0.520745 |
Target: 5'- aGGCGCCUGacgaggaaGUCCAccggcugCaCGCUCGgCCCCg -3' miRNA: 3'- -CCGUGGGCg-------CGGGUa------G-GUGAGC-GGGG- -5' |
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3135 | 5' | -62.6 | NC_001493.1 | + | 134155 | 0.67 | 0.54822 |
Target: 5'- uGGUuccuACCCGCGaggguccUCCGggaaggguUCCucaggGCUCGCCCCg -3' miRNA: 3'- -CCG----UGGGCGC-------GGGU--------AGG-----UGAGCGGGG- -5' |
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3135 | 5' | -62.6 | NC_001493.1 | + | 97601 | 0.67 | 0.568396 |
Target: 5'- cGGUAUgaUGUGCCCAugcUCCGCaguguUCuGCCCCa -3' miRNA: 3'- -CCGUGg-GCGCGGGU---AGGUG-----AG-CGGGG- -5' |
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3135 | 5' | -62.6 | NC_001493.1 | + | 27984 | 0.67 | 0.568396 |
Target: 5'- cGGCACCCGaaCCCGUaucCCAgUuacCGCCgCCa -3' miRNA: 3'- -CCGUGGGCgcGGGUA---GGUgA---GCGG-GG- -5' |
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3135 | 5' | -62.6 | NC_001493.1 | + | 68296 | 0.67 | 0.558763 |
Target: 5'- cGCACCCGUGaaggCAUCgAC-CGCCgCCg -3' miRNA: 3'- cCGUGGGCGCgg--GUAGgUGaGCGG-GG- -5' |
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3135 | 5' | -62.6 | NC_001493.1 | + | 8822 | 0.67 | 0.549175 |
Target: 5'- cGGCGCgUG-GCCCGUCCGUgucCGCaCCCc -3' miRNA: 3'- -CCGUGgGCgCGGGUAGGUGa--GCG-GGG- -5' |
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3135 | 5' | -62.6 | NC_001493.1 | + | 3108 | 0.67 | 0.530162 |
Target: 5'- cGGUGCCCGguucCUCAUCCuuCUCGUCCUc -3' miRNA: 3'- -CCGUGGGCgc--GGGUAGGu-GAGCGGGG- -5' |
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3135 | 5' | -62.6 | NC_001493.1 | + | 118663 | 0.67 | 0.530162 |
Target: 5'- cGGUGCCCGguucCUCAUCCuuCUCGUCCUc -3' miRNA: 3'- -CCGUGGGCgc--GGGUAGGu-GAGCGGGG- -5' |
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3135 | 5' | -62.6 | NC_001493.1 | + | 3210 | 0.67 | 0.53964 |
Target: 5'- -cCACCCcgGCGCUCugGUCCAUcaugUCGCCCa -3' miRNA: 3'- ccGUGGG--CGCGGG--UAGGUG----AGCGGGg -5' |
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3135 | 5' | -62.6 | NC_001493.1 | + | 118764 | 0.67 | 0.53964 |
Target: 5'- -cCACCCcgGCGCUCugGUCCAUcaugUCGCCCa -3' miRNA: 3'- ccGUGGG--CGCGGG--UAGGUG----AGCGGGg -5' |
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3135 | 5' | -62.6 | NC_001493.1 | + | 120113 | 0.67 | 0.53964 |
Target: 5'- cGCugCCGCGCCC--CCGggugUGCCCa -3' miRNA: 3'- cCGugGGCGCGGGuaGGUga--GCGGGg -5' |
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3135 | 5' | -62.6 | NC_001493.1 | + | 13346 | 0.67 | 0.54822 |
Target: 5'- cGGCGggacgugUUCGCGCCCGaccuguacgguUCCGgaccgcucccccCUUGCCCCg -3' miRNA: 3'- -CCGU-------GGGCGCGGGU-----------AGGU------------GAGCGGGG- -5' |
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3135 | 5' | -62.6 | NC_001493.1 | + | 128900 | 0.67 | 0.54822 |
Target: 5'- cGGCGggacgugUUCGCGCCCGaccuguacgguUCCGgaccgcucccccCUUGCCCCg -3' miRNA: 3'- -CCGU-------GGGCGCGGGU-----------AGGU------------GAGCGGGG- -5' |
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3135 | 5' | -62.6 | NC_001493.1 | + | 90454 | 0.67 | 0.549175 |
Target: 5'- uGGCucaugACCCcgaGCGCaCCGUCCAUggUgGCCCg -3' miRNA: 3'- -CCG-----UGGG---CGCG-GGUAGGUG--AgCGGGg -5' |
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3135 | 5' | -62.6 | NC_001493.1 | + | 14950 | 0.68 | 0.474734 |
Target: 5'- gGGUGCCauaGCGCUC--CCGCUCcGCUCCu -3' miRNA: 3'- -CCGUGGg--CGCGGGuaGGUGAG-CGGGG- -5' |
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3135 | 5' | -62.6 | NC_001493.1 | + | 61336 | 0.68 | 0.499344 |
Target: 5'- aGGCAgguuggcccggaguCCCGCGaCCCAgUCCA-UC-CCCCg -3' miRNA: 3'- -CCGU--------------GGGCGC-GGGU-AGGUgAGcGGGG- -5' |
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3135 | 5' | -62.6 | NC_001493.1 | + | 29636 | 0.68 | 0.492907 |
Target: 5'- -cCGCCUGCGCCUugugCUGCUCGUCgCg -3' miRNA: 3'- ccGUGGGCGCGGGua--GGUGAGCGGgG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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