miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3135 5' -62.6 NC_001493.1 + 27984 0.67 0.568396
Target:  5'- cGGCACCCGaaCCCGUaucCCAgUuacCGCCgCCa -3'
miRNA:   3'- -CCGUGGGCgcGGGUA---GGUgA---GCGG-GG- -5'
3135 5' -62.6 NC_001493.1 + 68296 0.67 0.558763
Target:  5'- cGCACCCGUGaaggCAUCgAC-CGCCgCCg -3'
miRNA:   3'- cCGUGGGCGCgg--GUAGgUGaGCGG-GG- -5'
3135 5' -62.6 NC_001493.1 + 124376 0.67 0.549175
Target:  5'- cGGCGCgUG-GCCCGUCCGUgucCGCaCCCc -3'
miRNA:   3'- -CCGUGgGCgCGGGUAGGUGa--GCG-GGG- -5'
3135 5' -62.6 NC_001493.1 + 90454 0.67 0.549175
Target:  5'- uGGCucaugACCCcgaGCGCaCCGUCCAUggUgGCCCg -3'
miRNA:   3'- -CCG-----UGGG---CGCG-GGUAGGUG--AgCGGGg -5'
3135 5' -62.6 NC_001493.1 + 8822 0.67 0.549175
Target:  5'- cGGCGCgUG-GCCCGUCCGUgucCGCaCCCc -3'
miRNA:   3'- -CCGUGgGCgCGGGUAGGUGa--GCG-GGG- -5'
3135 5' -62.6 NC_001493.1 + 13346 0.67 0.54822
Target:  5'- cGGCGggacgugUUCGCGCCCGaccuguacgguUCCGgaccgcucccccCUUGCCCCg -3'
miRNA:   3'- -CCGU-------GGGCGCGGGU-----------AGGU------------GAGCGGGG- -5'
3135 5' -62.6 NC_001493.1 + 128900 0.67 0.54822
Target:  5'- cGGCGggacgugUUCGCGCCCGaccuguacgguUCCGgaccgcucccccCUUGCCCCg -3'
miRNA:   3'- -CCGU-------GGGCGCGGGU-----------AGGU------------GAGCGGGG- -5'
3135 5' -62.6 NC_001493.1 + 134155 0.67 0.54822
Target:  5'- uGGUuccuACCCGCGaggguccUCCGggaaggguUCCucaggGCUCGCCCCg -3'
miRNA:   3'- -CCG----UGGGCGC-------GGGU--------AGG-----UGAGCGGGG- -5'
3135 5' -62.6 NC_001493.1 + 18600 0.67 0.54822
Target:  5'- uGGUuccuACCCGCGaggguccUCCGggaaggguUCCucaggGCUCGCCCCg -3'
miRNA:   3'- -CCG----UGGGCGC-------GGGU--------AGG-----UGAGCGGGG- -5'
3135 5' -62.6 NC_001493.1 + 120113 0.67 0.53964
Target:  5'- cGCugCCGCGCCC--CCGggugUGCCCa -3'
miRNA:   3'- cCGugGGCGCGGGuaGGUga--GCGGGg -5'
3135 5' -62.6 NC_001493.1 + 3210 0.67 0.53964
Target:  5'- -cCACCCcgGCGCUCugGUCCAUcaugUCGCCCa -3'
miRNA:   3'- ccGUGGG--CGCGGG--UAGGUG----AGCGGGg -5'
3135 5' -62.6 NC_001493.1 + 118764 0.67 0.53964
Target:  5'- -cCACCCcgGCGCUCugGUCCAUcaugUCGCCCa -3'
miRNA:   3'- ccGUGGG--CGCGGG--UAGGUG----AGCGGGg -5'
3135 5' -62.6 NC_001493.1 + 4559 0.67 0.53964
Target:  5'- cGCugCCGCGCCC--CCGggugUGCCCa -3'
miRNA:   3'- cCGugGGCGCGGGuaGGUga--GCGGGg -5'
3135 5' -62.6 NC_001493.1 + 3108 0.67 0.530162
Target:  5'- cGGUGCCCGguucCUCAUCCuuCUCGUCCUc -3'
miRNA:   3'- -CCGUGGGCgc--GGGUAGGu-GAGCGGGG- -5'
3135 5' -62.6 NC_001493.1 + 118663 0.67 0.530162
Target:  5'- cGGUGCCCGguucCUCAUCCuuCUCGUCCUc -3'
miRNA:   3'- -CCGUGGGCgc--GGGUAGGu-GAGCGGGG- -5'
3135 5' -62.6 NC_001493.1 + 5338 0.67 0.520745
Target:  5'- aGGCGCCUGacgaggaaGUCCAccggcugCaCGCUCGgCCCCg -3'
miRNA:   3'- -CCGUGGGCg-------CGGGUa------G-GUGAGC-GGGG- -5'
3135 5' -62.6 NC_001493.1 + 120892 0.67 0.520745
Target:  5'- aGGCGCCUGacgaggaaGUCCAccggcugCaCGCUCGgCCCCg -3'
miRNA:   3'- -CCGUGGGCg-------CGGGUa------G-GUGAGC-GGGG- -5'
3135 5' -62.6 NC_001493.1 + 55036 0.68 0.511394
Target:  5'- gGGCGCugaCCGUgggcgGCUCGcaCCACUCGCUCCc -3'
miRNA:   3'- -CCGUG---GGCG-----CGGGUa-GGUGAGCGGGG- -5'
3135 5' -62.6 NC_001493.1 + 101816 0.68 0.511394
Target:  5'- cGCACCCGUGa-UAUCCACgcgugGCUCCa -3'
miRNA:   3'- cCGUGGGCGCggGUAGGUGag---CGGGG- -5'
3135 5' -62.6 NC_001493.1 + 110508 0.68 0.511394
Target:  5'- aGGUcgaGCCCGCGCCCGgagugaaacUCgAUggGCCgCCg -3'
miRNA:   3'- -CCG---UGGGCGCGGGU---------AGgUGagCGG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.