miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31350 5' -50.8 NC_006623.1 + 19748 0.66 0.994741
Target:  5'- -cUCUcGGAGGAGGCGAagaaguaucaCGACGAuacucgacGGAGg -3'
miRNA:   3'- ucAGA-CCUUUUCUGCU----------GCUGCU--------CCUC- -5'
31350 5' -50.8 NC_006623.1 + 46870 0.66 0.992956
Target:  5'- cGUaUGaGAGGAG-CGAUGGCGcAGGAGg -3'
miRNA:   3'- uCAgAC-CUUUUCuGCUGCUGC-UCCUC- -5'
31350 5' -50.8 NC_006623.1 + 115418 0.67 0.990718
Target:  5'- cGUUgGGAAGAccgacaACGACGAUGAGGGu -3'
miRNA:   3'- uCAGaCCUUUUc-----UGCUGCUGCUCCUc -5'
31350 5' -50.8 NC_006623.1 + 146194 0.67 0.990718
Target:  5'- cGUUgGGAAGAccgacaACGACGAUGAGGGu -3'
miRNA:   3'- uCAGaCCUUUUc-----UGCUGCUGCUCCUc -5'
31350 5' -50.8 NC_006623.1 + 146509 0.67 0.987956
Target:  5'- -aUCUGaAGAAGACGGgGACGAGaAGa -3'
miRNA:   3'- ucAGACcUUUUCUGCUgCUGCUCcUC- -5'
31350 5' -50.8 NC_006623.1 + 115103 0.67 0.987956
Target:  5'- -aUCUGaAGAAGACGGgGACGAGaAGa -3'
miRNA:   3'- ucAGACcUUUUCUGCUgCUGCUCcUC- -5'
31350 5' -50.8 NC_006623.1 + 144906 0.69 0.97023
Target:  5'- -cUCUacGGGAGuccuGGCGGCGGCGAcGGAGc -3'
miRNA:   3'- ucAGA--CCUUUu---CUGCUGCUGCU-CCUC- -5'
31350 5' -50.8 NC_006623.1 + 116706 0.69 0.97023
Target:  5'- -cUCUacGGGAGuccuGGCGGCGGCGAcGGAGc -3'
miRNA:   3'- ucAGA--CCUUUu---CUGCUGCUGCU-CCUC- -5'
31350 5' -50.8 NC_006623.1 + 108662 0.69 0.956451
Target:  5'- aAGcUgUGGAGGGGAgcgucuaGAUGGCGAGGGGa -3'
miRNA:   3'- -UC-AgACCUUUUCUg------CUGCUGCUCCUC- -5'
31350 5' -50.8 NC_006623.1 + 140630 0.7 0.933844
Target:  5'- uGGUCUGGA---GGCauCGGCGGGGGGa -3'
miRNA:   3'- -UCAGACCUuuuCUGcuGCUGCUCCUC- -5'
31350 5' -50.8 NC_006623.1 + 120982 0.7 0.933844
Target:  5'- uGGUCUGGA---GGCauCGGCGGGGGGa -3'
miRNA:   3'- -UCAGACCUuuuCUGcuGCUGCUCCUC- -5'
31350 5' -50.8 NC_006623.1 + 140223 0.74 0.820468
Target:  5'- cAGcCUGGGugccggGGAGugGACuugGGCGAGGAGg -3'
miRNA:   3'- -UCaGACCU------UUUCugCUG---CUGCUCCUC- -5'
31350 5' -50.8 NC_006623.1 + 121389 0.74 0.820468
Target:  5'- cAGcCUGGGugccggGGAGugGACuugGGCGAGGAGg -3'
miRNA:   3'- -UCaGACCU------UUUCugCUG---CUGCUCCUC- -5'
31350 5' -50.8 NC_006623.1 + 132817 0.77 0.627723
Target:  5'- cGUCUGGuucuacgugauuaaGGgcGACGACGGCGAGGAc -3'
miRNA:   3'- uCAGACC--------------UUuuCUGCUGCUGCUCCUc -5'
31350 5' -50.8 NC_006623.1 + 114962 0.96 0.067106
Target:  5'- gAGUCUGaAGAAGACGACGACGAGGAGc -3'
miRNA:   3'- -UCAGACcUUUUCUGCUGCUGCUCCUC- -5'
31350 5' -50.8 NC_006623.1 + 146650 0.96 0.067106
Target:  5'- gAGUCUGaAGAAGACGACGACGAGGAGc -3'
miRNA:   3'- -UCAGACcUUUUCUGCUGCUGCUCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.