miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31351 3' -54.1 NC_006623.1 + 125496 0.67 0.903833
Target:  5'- uGCGCGAGCGggaCA----GGGC-CGGCg -3'
miRNA:   3'- uCGCGCUCGCg--GUaauuUUCGcGCCG- -5'
31351 3' -54.1 NC_006623.1 + 133980 0.68 0.897313
Target:  5'- gGGUGCGAGCGU---------CGCGGCa -3'
miRNA:   3'- -UCGCGCUCGCGguaauuuucGCGCCG- -5'
31351 3' -54.1 NC_006623.1 + 137872 0.68 0.883555
Target:  5'- uAGcCGCGGGCGCUAUU-----CGCGGg -3'
miRNA:   3'- -UC-GCGCUCGCGGUAAuuuucGCGCCg -5'
31351 3' -54.1 NC_006623.1 + 117 0.68 0.876325
Target:  5'- uGGCGCGuuuGGC-CCccUGccAGCGCGGCc -3'
miRNA:   3'- -UCGCGC---UCGcGGuaAUuuUCGCGCCG- -5'
31351 3' -54.1 NC_006623.1 + 101655 0.68 0.876325
Target:  5'- uGGCGgaaGAGCGgCAgcgcAGGGGCaGCGGCc -3'
miRNA:   3'- -UCGCg--CUCGCgGUaa--UUUUCG-CGCCG- -5'
31351 3' -54.1 NC_006623.1 + 137984 0.68 0.868868
Target:  5'- cAGCGCGccGGcCGCCG---GAcuCGCGGCg -3'
miRNA:   3'- -UCGCGC--UC-GCGGUaauUUucGCGCCG- -5'
31351 3' -54.1 NC_006623.1 + 123628 0.68 0.868868
Target:  5'- cAGCGCGccGGcCGCCG---GAcuCGCGGCg -3'
miRNA:   3'- -UCGCGC--UC-GCGGUaauUUucGCGCCG- -5'
31351 3' -54.1 NC_006623.1 + 125127 0.68 0.866587
Target:  5'- aGGCGuCGAGCGCCucgccgaacuuGUUAgugugacaaugacaGAAcGCGCGGa -3'
miRNA:   3'- -UCGC-GCUCGCGG-----------UAAU--------------UUU-CGCGCCg -5'
31351 3' -54.1 NC_006623.1 + 122875 0.68 0.861189
Target:  5'- cGGCGCGcaaGGCgGCCAggUAuucGCGaCGGCg -3'
miRNA:   3'- -UCGCGC---UCG-CGGUa-AUuuuCGC-GCCG- -5'
31351 3' -54.1 NC_006623.1 + 138736 0.68 0.861189
Target:  5'- cGGCGCGcaaGGCgGCCAggUAuucGCGaCGGCg -3'
miRNA:   3'- -UCGCGC---UCG-CGGUa-AUuuuCGC-GCCG- -5'
31351 3' -54.1 NC_006623.1 + 60061 0.69 0.853294
Target:  5'- aAGCGCGGucuucuagcGCGUCA----AGGCGaCGGCu -3'
miRNA:   3'- -UCGCGCU---------CGCGGUaauuUUCGC-GCCG- -5'
31351 3' -54.1 NC_006623.1 + 68565 0.69 0.853294
Target:  5'- -uUGCG-GCGCCGUUGcu--CGCGGCu -3'
miRNA:   3'- ucGCGCuCGCGGUAAUuuucGCGCCG- -5'
31351 3' -54.1 NC_006623.1 + 131382 0.69 0.853294
Target:  5'- gAGCGCGAGCGgUuucgGGGGGCGU-GCu -3'
miRNA:   3'- -UCGCGCUCGCgGuaa-UUUUCGCGcCG- -5'
31351 3' -54.1 NC_006623.1 + 131557 0.69 0.852493
Target:  5'- gGGCGC-AGaGCCGgaAAuuacucagaccccGAGCGCGGCa -3'
miRNA:   3'- -UCGCGcUCgCGGUaaUU-------------UUCGCGCCG- -5'
31351 3' -54.1 NC_006623.1 + 132318 0.69 0.84519
Target:  5'- cAGCGCGAGaGCaggc-GAGGCGUGGa -3'
miRNA:   3'- -UCGCGCUCgCGguaauUUUCGCGCCg -5'
31351 3' -54.1 NC_006623.1 + 27367 0.69 0.828385
Target:  5'- gGGCGCGAauaGUGCCcgUcAAGGU-CGGCg -3'
miRNA:   3'- -UCGCGCU---CGCGGuaAuUUUCGcGCCG- -5'
31351 3' -54.1 NC_006623.1 + 137787 0.69 0.827525
Target:  5'- cGCGCGGGCgGCCuguacgaucacCGCGGCc -3'
miRNA:   3'- uCGCGCUCG-CGGuaauuuuc---GCGCCG- -5'
31351 3' -54.1 NC_006623.1 + 123824 0.69 0.827525
Target:  5'- cGCGCGGGCgGCCuguacgaucacCGCGGCc -3'
miRNA:   3'- uCGCGCUCG-CGGuaauuuuc---GCGCCG- -5'
31351 3' -54.1 NC_006623.1 + 511 0.69 0.819699
Target:  5'- aAGCG-GAGCGagGUaGGGAGUGUGGCu -3'
miRNA:   3'- -UCGCgCUCGCggUAaUUUUCGCGCCG- -5'
31351 3' -54.1 NC_006623.1 + 121521 0.7 0.801803
Target:  5'- cGCGUccGuGCGUUAUUGcgguGCGCGGCa -3'
miRNA:   3'- uCGCG--CuCGCGGUAAUuuu-CGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.