miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31351 5' -58.4 NC_006623.1 + 6183 0.66 0.824098
Target:  5'- uGGCCGCGCUgCCggacgCUGCUUUGCUUCuuGCu -3'
miRNA:   3'- gUCGGUGUGA-GG-----GAUGGAGCGAGG--CG- -5'
31351 5' -58.4 NC_006623.1 + 6592 0.66 0.806992
Target:  5'- gCAGUUAUGCUCCUugUGCCgCGCgguUCCGUc -3'
miRNA:   3'- -GUCGGUGUGAGGG--AUGGaGCG---AGGCG- -5'
31351 5' -58.4 NC_006623.1 + 132498 0.66 0.789269
Target:  5'- cCAGaaauCCACGcCUCgCCUGCuCUCGCgCUGCu -3'
miRNA:   3'- -GUC----GGUGU-GAG-GGAUG-GAGCGaGGCG- -5'
31351 5' -58.4 NC_006623.1 + 135395 0.66 0.780197
Target:  5'- uCGGCCGC-CUucaUCUUGCacgCGUUCCGCa -3'
miRNA:   3'- -GUCGGUGuGA---GGGAUGga-GCGAGGCG- -5'
31351 5' -58.4 NC_006623.1 + 10170 0.66 0.779283
Target:  5'- aAGgCAUAUUCCCUACUUCuaaggcaagccauGCUUCGUc -3'
miRNA:   3'- gUCgGUGUGAGGGAUGGAG-------------CGAGGCG- -5'
31351 5' -58.4 NC_006623.1 + 116154 0.67 0.770997
Target:  5'- gAGCCAUACgugCCCgcCCaUCGCg-CGCg -3'
miRNA:   3'- gUCGGUGUGa--GGGauGG-AGCGagGCG- -5'
31351 5' -58.4 NC_006623.1 + 145458 0.67 0.770997
Target:  5'- gAGCCAUACgugCCCgcCCaUCGCg-CGCg -3'
miRNA:   3'- gUCGGUGUGa--GGGauGG-AGCGagGCG- -5'
31351 5' -58.4 NC_006623.1 + 141 0.67 0.765418
Target:  5'- gCGGCCcugcguucgugcgcaGCACcCCCUGCCccgcggcaaUCGCUCCc- -3'
miRNA:   3'- -GUCGG---------------UGUGaGGGAUGG---------AGCGAGGcg -5'
31351 5' -58.4 NC_006623.1 + 101474 0.67 0.761675
Target:  5'- gGGCCGCuGC-CCCUGCgCUgcCGCucuUCCGCc -3'
miRNA:   3'- gUCGGUG-UGaGGGAUG-GA--GCG---AGGCG- -5'
31351 5' -58.4 NC_006623.1 + 66350 0.68 0.683823
Target:  5'- gAGCCAauaaagaauUUCCCUgGCCUCGUUCCa- -3'
miRNA:   3'- gUCGGUgu-------GAGGGA-UGGAGCGAGGcg -5'
31351 5' -58.4 NC_006623.1 + 105781 0.68 0.673814
Target:  5'- -uGCCGCugUCCaccguUCUCGCguuccUCCGCg -3'
miRNA:   3'- guCGGUGugAGGgau--GGAGCG-----AGGCG- -5'
31351 5' -58.4 NC_006623.1 + 58975 0.68 0.673814
Target:  5'- aCGGCUAUuuuguUUCCCUGCCcUGCuUCUGCa -3'
miRNA:   3'- -GUCGGUGu----GAGGGAUGGaGCG-AGGCG- -5'
31351 5' -58.4 NC_006623.1 + 128423 0.69 0.613346
Target:  5'- gAGCUACGCaUCCCUauaaaguguACC-CGCUgaCCGCu -3'
miRNA:   3'- gUCGGUGUG-AGGGA---------UGGaGCGA--GGCG- -5'
31351 5' -58.4 NC_006623.1 + 634 0.7 0.593218
Target:  5'- -uGCUaggACGCgacCCCUGCCUaagcgagGCUCCGCa -3'
miRNA:   3'- guCGG---UGUGa--GGGAUGGAg------CGAGGCG- -5'
31351 5' -58.4 NC_006623.1 + 335 1.1 0.00131
Target:  5'- gCAGCCACACUCCCUACCUCGCUCCGCu -3'
miRNA:   3'- -GUCGGUGUGAGGGAUGGAGCGAGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.