miRNA: 3'- aauuaaaUAGGCuCCUAAACCcGGCU- -5'
miRNA: 3'- aaUUAAauaGGCUCCUAAACCCGGCu -5'
miRNA: 3'- aaUUAAAUAGGCUCCUAAACCCGGCU- -5'
miRNA: 3'- -AAUUAAAUAGGCUCCUAAACCCGGCU- -5'
Results 1 - 4 of 4 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 31352 | 5' | -46.8 | NC_006623.1 | + | 129238 | 0.66 | 0.999762 |
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Target: 5'- ------cAUCCG-GGGUUUGGuCCGAc -3' miRNA: 3'- aauuaaaUAGGCuCCUAAACCcGGCU- -5' |
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| 31352 | 5' | -46.8 | NC_006623.1 | + | 967 | 0.84 | 0.507129 |
|
Target: 5'- -cAAUUcagCCGAGGAUUUGGGCCGc -3' miRNA: 3'- aaUUAAauaGGCUCCUAAACCCGGCu -5' |
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| 31352 | 5' | -46.8 | NC_006623.1 | + | 253 | 1.05 | 0.034313 |
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Target: 5'- -aAAUUUAUCCGAGGAUUUGGGCCGAa -3' miRNA: 3'- aaUUAAAUAGGCUCCUAAACCCGGCU- -5' |
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| 31352 | 5' | -46.8 | NC_006623.1 | + | 845 | 1.08 | 0.021988 |
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Target: 5'- aUUAAUUUAUCCGAGGAUUUGGGCCGAa -3' miRNA: 3'- -AAUUAAAUAGGCUCCUAAACCCGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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