miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31354 5' -46.3 NC_006623.1 + 138229 0.66 0.999956
Target:  5'- -gGAgGGUgaAGUUUGACAGaGGcaGCGCu -3'
miRNA:   3'- caUUgCCAa-UCAAAUUGUCaCC--CGCG- -5'
31354 5' -46.3 NC_006623.1 + 123383 0.66 0.999956
Target:  5'- -gGAgGGUgaAGUUUGACAGaGGcaGCGCu -3'
miRNA:   3'- caUUgCCAa-UCAAAUUGUCaCC--CGCG- -5'
31354 5' -46.3 NC_006623.1 + 76801 0.66 0.999941
Target:  5'- -gGugGGUuacUAGUUgcuuGCu-UGGGCGCa -3'
miRNA:   3'- caUugCCA---AUCAAau--UGucACCCGCG- -5'
31354 5' -46.3 NC_006623.1 + 16058 0.66 0.999908
Target:  5'- aGUAGCaGGgaAGUUUGcagcuauaaaaucuuACGGUgaaauacagGGGCGCa -3'
miRNA:   3'- -CAUUG-CCaaUCAAAU---------------UGUCA---------CCCGCG- -5'
31354 5' -46.3 NC_006623.1 + 106401 0.66 0.999897
Target:  5'- -gAAUGGcgug-UUGACuuacGUGGGCGCg -3'
miRNA:   3'- caUUGCCaaucaAAUUGu---CACCCGCG- -5'
31354 5' -46.3 NC_006623.1 + 129598 0.66 0.999897
Target:  5'- -aAGCaGUUAGguauguuGC-GUGGGCGCu -3'
miRNA:   3'- caUUGcCAAUCaaau---UGuCACCCGCG- -5'
31354 5' -46.3 NC_006623.1 + 139585 0.67 0.999861
Target:  5'- -cGGCGGgauGUccGGCGGUcgcaaagGGGCGCg -3'
miRNA:   3'- caUUGCCaauCAaaUUGUCA-------CCCGCG- -5'
31354 5' -46.3 NC_006623.1 + 122027 0.67 0.999861
Target:  5'- -cGGCGGgauGUccGGCGGUcgcaaagGGGCGCg -3'
miRNA:   3'- caUUGCCaauCAaaUUGUCA-------CCCGCG- -5'
31354 5' -46.3 NC_006623.1 + 25722 0.67 0.999824
Target:  5'- -cAACGGacucUAGaagcggUGGCGG-GGGCGCg -3'
miRNA:   3'- caUUGCCa---AUCaa----AUUGUCaCCCGCG- -5'
31354 5' -46.3 NC_006623.1 + 115495 0.67 0.999824
Target:  5'- -gAACGGUUGGaac-GgGGUGGGCu- -3'
miRNA:   3'- caUUGCCAAUCaaauUgUCACCCGcg -5'
31354 5' -46.3 NC_006623.1 + 146117 0.67 0.999824
Target:  5'- -gAACGGUUGGaac-GgGGUGGGCu- -3'
miRNA:   3'- caUUGCCAAUCaaauUgUCACCCGcg -5'
31354 5' -46.3 NC_006623.1 + 101256 0.68 0.999631
Target:  5'- -cAACGGUcaUAGUUU-GCu-UGGGUGCg -3'
miRNA:   3'- caUUGCCA--AUCAAAuUGucACCCGCG- -5'
31354 5' -46.3 NC_006623.1 + 111230 0.7 0.996006
Target:  5'- cUAACGGaaaaGGUgu-ACGG-GGGCGCa -3'
miRNA:   3'- cAUUGCCaa--UCAaauUGUCaCCCGCG- -5'
31354 5' -46.3 NC_006623.1 + 908 0.71 0.994498
Target:  5'- -gAACGGUaGGgu--ACGGcGGGCGCc -3'
miRNA:   3'- caUUGCCAaUCaaauUGUCaCCCGCG- -5'
31354 5' -46.3 NC_006623.1 + 147326 0.71 0.992559
Target:  5'- --cACGGUUaccaccaagGGUcagUGACAGUGGGaUGCg -3'
miRNA:   3'- cauUGCCAA---------UCAa--AUUGUCACCC-GCG- -5'
31354 5' -46.3 NC_006623.1 + 114286 0.71 0.992559
Target:  5'- --cACGGUUaccaccaagGGUcagUGACAGUGGGaUGCg -3'
miRNA:   3'- cauUGCCAA---------UCAa--AUUGUCACCC-GCG- -5'
31354 5' -46.3 NC_006623.1 + 139328 0.72 0.983367
Target:  5'- --cGCGGccuaGGUUUGaggccGCGGUGGGCGUc -3'
miRNA:   3'- cauUGCCaa--UCAAAU-----UGUCACCCGCG- -5'
31354 5' -46.3 NC_006623.1 + 122284 0.72 0.983367
Target:  5'- --cGCGGccuaGGUUUGaggccGCGGUGGGCGUc -3'
miRNA:   3'- cauUGCCaa--UCAAAU-----UGUCACCCGCG- -5'
31354 5' -46.3 NC_006623.1 + 1947 1.15 0.011306
Target:  5'- aGUAACGGUUAGUUUAACAGUGGGCGCa -3'
miRNA:   3'- -CAUUGCCAAUCAAAUUGUCACCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.