miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31356 5' -57.2 NC_006623.1 + 9386 0.66 0.875008
Target:  5'- -uGCUGGUCUaaGCUCCGuaucuguauccauuaAAGGCuCCa -3'
miRNA:   3'- acUGGCCAGGgaCGAGGU---------------UUCCGuGG- -5'
31356 5' -57.2 NC_006623.1 + 69249 0.66 0.864738
Target:  5'- gUGugCaGUCCCUGgaCUCCAacaccGAGGgAUCg -3'
miRNA:   3'- -ACugGcCAGGGAC--GAGGU-----UUCCgUGG- -5'
31356 5' -57.2 NC_006623.1 + 129668 0.67 0.824866
Target:  5'- cGACCGGcagauucugCCgaGUUUgGAAGGUGCCu -3'
miRNA:   3'- aCUGGCCa--------GGgaCGAGgUUUCCGUGG- -5'
31356 5' -57.2 NC_006623.1 + 143817 0.67 0.816344
Target:  5'- cGGCCuaGGUCUgggaGCUCCGuAGGCGCg -3'
miRNA:   3'- aCUGG--CCAGGga--CGAGGUuUCCGUGg -5'
31356 5' -57.2 NC_006623.1 + 117794 0.67 0.816344
Target:  5'- cGGCCuaGGUCUgggaGCUCCGuAGGCGCg -3'
miRNA:   3'- aCUGG--CCAGGga--CGAGGUuUCCGUGg -5'
31356 5' -57.2 NC_006623.1 + 146758 0.68 0.752524
Target:  5'- -cACgCGGUCCCgaaUCgGGAGGCGCUg -3'
miRNA:   3'- acUG-GCCAGGGacgAGgUUUCCGUGG- -5'
31356 5' -57.2 NC_006623.1 + 114853 0.68 0.752524
Target:  5'- -cACgCGGUCCCgaaUCgGGAGGCGCUg -3'
miRNA:   3'- acUG-GCCAGGGacgAGgUUUCCGUGG- -5'
31356 5' -57.2 NC_006623.1 + 116513 0.68 0.752524
Target:  5'- cGGCCGaaggCUCUGCUCCGucGcCGCCg -3'
miRNA:   3'- aCUGGCca--GGGACGAGGUuuCcGUGG- -5'
31356 5' -57.2 NC_006623.1 + 145099 0.68 0.752524
Target:  5'- cGGCCGaaggCUCUGCUCCGucGcCGCCg -3'
miRNA:   3'- aCUGGCca--GGGACGAGGUuuCcGUGG- -5'
31356 5' -57.2 NC_006623.1 + 80685 0.68 0.751568
Target:  5'- aUGuCCGucaaaauGUCCCUGCUCaacguGGGGgACCa -3'
miRNA:   3'- -ACuGGC-------CAGGGACGAGgu---UUCCgUGG- -5'
31356 5' -57.2 NC_006623.1 + 129867 0.69 0.693626
Target:  5'- uUGGauGGUUCCU-C-CCGGAGGCACCu -3'
miRNA:   3'- -ACUggCCAGGGAcGaGGUUUCCGUGG- -5'
31356 5' -57.2 NC_006623.1 + 123911 0.7 0.66337
Target:  5'- gGGCaGGUCCgUGCccCUAAAGGcCGCCg -3'
miRNA:   3'- aCUGgCCAGGgACGa-GGUUUCC-GUGG- -5'
31356 5' -57.2 NC_006623.1 + 137701 0.7 0.66337
Target:  5'- gGGCaGGUCCgUGCccCUAAAGGcCGCCg -3'
miRNA:   3'- aCUGgCCAGGgACGa-GGUUUCC-GUGG- -5'
31356 5' -57.2 NC_006623.1 + 118140 0.71 0.602402
Target:  5'- gGACgGGgcgCCggUUGCUCCAAAGaucGCGCCa -3'
miRNA:   3'- aCUGgCCa--GG--GACGAGGUUUC---CGUGG- -5'
31356 5' -57.2 NC_006623.1 + 143472 0.71 0.602402
Target:  5'- gGACgGGgcgCCggUUGCUCCAAAGaucGCGCCa -3'
miRNA:   3'- aCUGgCCa--GG--GACGAGGUUUC---CGUGG- -5'
31356 5' -57.2 NC_006623.1 + 1236 0.71 0.562087
Target:  5'- aGACCGG-CCUgGCacggacccCCAGAGGCAUCg -3'
miRNA:   3'- aCUGGCCaGGGaCGa-------GGUUUCCGUGG- -5'
31356 5' -57.2 NC_006623.1 + 137163 0.72 0.512812
Target:  5'- gGAgCGGUgCCC--CUCCGAAGGCACg -3'
miRNA:   3'- aCUgGCCA-GGGacGAGGUUUCCGUGg -5'
31356 5' -57.2 NC_006623.1 + 3899 0.74 0.420377
Target:  5'- -cGCCGcucaGUCCCUGCaagucUCUAAAGGCAUCa -3'
miRNA:   3'- acUGGC----CAGGGACG-----AGGUUUCCGUGG- -5'
31356 5' -57.2 NC_006623.1 + 2202 1.12 0.001277
Target:  5'- uUGACCGGUCCCUGCUCCAAAGGCACCg -3'
miRNA:   3'- -ACUGGCCAGGGACGAGGUUUCCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.