Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31357 | 5' | -50.4 | NC_006623.1 | + | 350 | 0.66 | 0.984663 |
Target: 5'- --aACAGAAAGUAggggagcgauugcCGCGG-GGCAGGGg -3' miRNA: 3'- aagUGUCUUUCAU-------------GCGCUaCCGUCUU- -5' |
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31357 | 5' | -50.4 | NC_006623.1 | + | 2355 | 1.04 | 0.014542 |
Target: 5'- cUUCACAGAAAGUACGCGAUGGCAGAAg -3' miRNA: 3'- -AAGUGUCUUUCAUGCGCUACCGUCUU- -5' |
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31357 | 5' | -50.4 | NC_006623.1 | + | 47165 | 0.69 | 0.941887 |
Target: 5'- --gGCGGAAAGU-CG-GAUGGCGGAc -3' miRNA: 3'- aagUGUCUUUCAuGCgCUACCGUCUu -5' |
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31357 | 5' | -50.4 | NC_006623.1 | + | 56346 | 0.66 | 0.988286 |
Target: 5'- aUCGCAGc---UugGCGAUGaGCGGGAa -3' miRNA: 3'- aAGUGUCuuucAugCGCUAC-CGUCUU- -5' |
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31357 | 5' | -50.4 | NC_006623.1 | + | 56922 | 0.66 | 0.989759 |
Target: 5'- aUC-UAGGGcAGUGCGCGAgaaGGUAGGAa -3' miRNA: 3'- aAGuGUCUU-UCAUGCGCUa--CCGUCUU- -5' |
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31357 | 5' | -50.4 | NC_006623.1 | + | 114815 | 0.67 | 0.982872 |
Target: 5'- -gCACAGGGAGUGCGCacgcGGUAGu- -3' miRNA: 3'- aaGUGUCUUUCAUGCGcua-CCGUCuu -5' |
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31357 | 5' | -50.4 | NC_006623.1 | + | 118597 | 0.68 | 0.955037 |
Target: 5'- cUCACAGGuAGGUGCGUuuggaggguucggGAUGGgAGAAc -3' miRNA: 3'- aAGUGUCU-UUCAUGCG-------------CUACCgUCUU- -5' |
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31357 | 5' | -50.4 | NC_006623.1 | + | 121718 | 0.69 | 0.951195 |
Target: 5'- --aGCAGAuaGAGgagACGCGG-GGCAGAAc -3' miRNA: 3'- aagUGUCU--UUCa--UGCGCUaCCGUCUU- -5' |
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31357 | 5' | -50.4 | NC_006623.1 | + | 126647 | 0.67 | 0.972961 |
Target: 5'- aUCACAGAGGGauaagGC-CGA-GGCGGAAa -3' miRNA: 3'- aAGUGUCUUUCa----UGcGCUaCCGUCUU- -5' |
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31357 | 5' | -50.4 | NC_006623.1 | + | 139894 | 0.69 | 0.951195 |
Target: 5'- --aGCAGAuaGAGgagACGCGG-GGCAGAAc -3' miRNA: 3'- aagUGUCU--UUCa--UGCGCUaCCGUCUU- -5' |
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31357 | 5' | -50.4 | NC_006623.1 | + | 143015 | 0.68 | 0.955037 |
Target: 5'- cUCACAGGuAGGUGCGUuuggaggguucggGAUGGgAGAAc -3' miRNA: 3'- aAGUGUCU-UUCAUGCG-------------CUACCgUCUU- -5' |
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31357 | 5' | -50.4 | NC_006623.1 | + | 146796 | 0.67 | 0.982872 |
Target: 5'- -gCACAGGGAGUGCGCacgcGGUAGu- -3' miRNA: 3'- aaGUGUCUUUCAUGCGcua-CCGUCuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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